Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nr1i3O35627 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nr1i3O35627 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Nr1i3O35627 Shroom3-211ENSMUST00000225438 5742 ntBASIC18.38■□□□□ 0.53
Nr1i3O35627 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nr1i3O35627 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC18.38■□□□□ 0.53
Nr1i3O35627 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
Nr1i3O35627 Gm15378-201ENSMUST00000121894 207 ntBASIC18.38■□□□□ 0.53
Nr1i3O35627 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nr1i3O35627 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nr1i3O35627 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nr1i3O35627 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Nr1i3O35627 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Nr1i3O35627 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nr1i3O35627 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nr1i3O35627 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
Nr1i3O35627 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nr1i3O35627 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nr1i3O35627 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nr1i3O35627 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nr1i3O35627 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nr1i3O35627 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Nr1i3O35627 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nr1i3O35627 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nr1i3O35627 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nr1i3O35627 Gm44878-201ENSMUST00000205812 1295 ntBASIC18.37■□□□□ 0.53
Nr1i3O35627 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nr1i3O35627 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nr1i3O35627 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nr1i3O35627 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Nr1i3O35627 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Nr1i3O35627 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nr1i3O35627 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nr1i3O35627 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC18.37■□□□□ 0.53
Nr1i3O35627 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Nr1i3O35627 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Nr1i3O35627 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nr1i3O35627 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC18.37■□□□□ 0.53
Nr1i3O35627 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nr1i3O35627 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nr1i3O35627 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Nr1i3O35627 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nr1i3O35627 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC18.36■□□□□ 0.53
Nr1i3O35627 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Nr1i3O35627 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Nr1i3O35627 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nr1i3O35627 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Nr1i3O35627 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nr1i3O35627 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nr1i3O35627 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nr1i3O35627 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC18.36■□□□□ 0.53
Nr1i3O35627 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nr1i3O35627 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Nr1i3O35627 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nr1i3O35627 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nr1i3O35627 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Nr1i3O35627 AC154231.1-201ENSMUST00000220564 2175 ntBASIC18.35■□□□□ 0.53
Nr1i3O35627 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nr1i3O35627 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Nr1i3O35627 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Nr1i3O35627 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nr1i3O35627 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Nr1i3O35627 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Nr1i3O35627 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC18.35■□□□□ 0.53
Nr1i3O35627 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Nr1i3O35627 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Nr1i3O35627 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC18.35■□□□□ 0.53
Nr1i3O35627 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC18.35■□□□□ 0.53
Nr1i3O35627 AC135637.1-201ENSMUST00000227750 365 ntBASIC18.35■□□□□ 0.53
Nr1i3O35627 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Nr1i3O35627 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC18.35■□□□□ 0.53
Nr1i3O35627 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nr1i3O35627 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC18.34■□□□□ 0.53
Nr1i3O35627 Gm28265-201ENSMUST00000188201 2319 ntBASIC18.34■□□□□ 0.53
Nr1i3O35627 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nr1i3O35627 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nr1i3O35627 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nr1i3O35627 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Nr1i3O35627 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nr1i3O35627 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nr1i3O35627 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nr1i3O35627 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nr1i3O35627 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Nr1i3O35627 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Nr1i3O35627 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Nr1i3O35627 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Nr1i3O35627 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Nr1i3O35627 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
Nr1i3O35627 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC18.33■□□□□ 0.52
Nr1i3O35627 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC18.33■□□□□ 0.52
Nr1i3O35627 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Nr1i3O35627 Gm37166-201ENSMUST00000195473 2474 ntBASIC18.33■□□□□ 0.52
Nr1i3O35627 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Nr1i3O35627 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Nr1i3O35627 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Nr1i3O35627 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Nr1i3O35627 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Nr1i3O35627 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Nr1i3O35627 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Nr1i3O35627 AL590614.2-201ENSMUST00000225374 1937 ntBASIC18.33■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms