Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chd3B1AR17 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chd3B1AR17 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chd3B1AR17 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC16.75■□□□□ 0.27
Chd3B1AR17 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chd3B1AR17 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Chd3B1AR17 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Chd3B1AR17 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chd3B1AR17 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chd3B1AR17 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chd3B1AR17 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chd3B1AR17 Gm43182-201ENSMUST00000199476 2528 ntBASIC16.74■□□□□ 0.27
Chd3B1AR17 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Chd3B1AR17 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chd3B1AR17 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Chd3B1AR17 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC16.74■□□□□ 0.27
Chd3B1AR17 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Chd3B1AR17 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chd3B1AR17 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chd3B1AR17 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Chd3B1AR17 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chd3B1AR17 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC16.74■□□□□ 0.27
Chd3B1AR17 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chd3B1AR17 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chd3B1AR17 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Chd3B1AR17 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Chd3B1AR17 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Chd3B1AR17 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
Chd3B1AR17 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC16.73■□□□□ 0.27
Chd3B1AR17 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Chd3B1AR17 Gm11355-201ENSMUST00000121120 306 ntBASIC16.73■□□□□ 0.27
Chd3B1AR17 Gm27000-201ENSMUST00000182943 842 ntBASIC16.73■□□□□ 0.27
Chd3B1AR17 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC16.73■□□□□ 0.27
Chd3B1AR17 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Chd3B1AR17 Gm21559-201ENSMUST00000220638 855 ntBASIC16.73■□□□□ 0.27
Chd3B1AR17 Gm8587-201ENSMUST00000076538 843 ntBASIC16.73■□□□□ 0.27
Chd3B1AR17 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Chd3B1AR17 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Chd3B1AR17 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Chd3B1AR17 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Chd3B1AR17 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Chd3B1AR17 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC16.73■□□□□ 0.27
Chd3B1AR17 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Chd3B1AR17 Gm8258-201ENSMUST00000055593 1449 ntBASIC16.73■□□□□ 0.27
Chd3B1AR17 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Chd3B1AR17 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Chd3B1AR17 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Chd3B1AR17 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Chd3B1AR17 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Chd3B1AR17 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Chd3B1AR17 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
Chd3B1AR17 Gm11336-201ENSMUST00000118168 334 ntBASIC16.73■□□□□ 0.27
Chd3B1AR17 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Chd3B1AR17 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Chd3B1AR17 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Chd3B1AR17 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Chd3B1AR17 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Chd3B1AR17 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Chd3B1AR17 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC16.72■□□□□ 0.27
Chd3B1AR17 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Chd3B1AR17 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Chd3B1AR17 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Chd3B1AR17 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Chd3B1AR17 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC16.72■□□□□ 0.27
Chd3B1AR17 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Chd3B1AR17 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Chd3B1AR17 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
Chd3B1AR17 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Chd3B1AR17 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Chd3B1AR17 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Chd3B1AR17 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
Chd3B1AR17 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Chd3B1AR17 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Chd3B1AR17 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Chd3B1AR17 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Chd3B1AR17 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Chd3B1AR17 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Chd3B1AR17 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Chd3B1AR17 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Chd3B1AR17 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Chd3B1AR17 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Chd3B1AR17 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Chd3B1AR17 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Chd3B1AR17 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Chd3B1AR17 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Chd3B1AR17 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC16.71■□□□□ 0.27
Chd3B1AR17 Gm27389-201ENSMUST00000183622 195 ntBASIC16.71■□□□□ 0.27
Chd3B1AR17 Gm29518-201ENSMUST00000190858 372 ntBASIC16.71■□□□□ 0.27
Chd3B1AR17 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
Chd3B1AR17 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Chd3B1AR17 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.26
Chd3B1AR17 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Chd3B1AR17 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Chd3B1AR17 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Chd3B1AR17 Gm27704-201ENSMUST00000185094 107 ntBASIC16.7■□□□□ 0.26
Chd3B1AR17 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC16.7■□□□□ 0.26
Chd3B1AR17 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Chd3B1AR17 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Chd3B1AR17 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Chd3B1AR17 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms