Protein–RNA interactions for Protein: A2AX52

Col6a4, Collagen alpha-4(VI) chain, mousemouse

Predictions only

Length 2,309 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a4A2AX52 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col6a4A2AX52 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col6a4A2AX52 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col6a4A2AX52 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Col6a4A2AX52 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC14.38□□□□□ -0.11
Col6a4A2AX52 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col6a4A2AX52 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col6a4A2AX52 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col6a4A2AX52 AC159301.1-201ENSMUST00000225130 1182 ntBASIC14.38□□□□□ -0.11
Col6a4A2AX52 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col6a4A2AX52 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC14.38□□□□□ -0.11
Col6a4A2AX52 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col6a4A2AX52 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col6a4A2AX52 Iqck-206ENSMUST00000208658 2891 ntBASIC14.38□□□□□ -0.11
Col6a4A2AX52 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a4A2AX52 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a4A2AX52 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
Col6a4A2AX52 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a4A2AX52 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC14.37□□□□□ -0.11
Col6a4A2AX52 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a4A2AX52 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a4A2AX52 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a4A2AX52 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a4A2AX52 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a4A2AX52 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a4A2AX52 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a4A2AX52 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a4A2AX52 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a4A2AX52 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a4A2AX52 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a4A2AX52 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Col6a4A2AX52 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a4A2AX52 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a4A2AX52 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC14.37□□□□□ -0.11
Col6a4A2AX52 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC14.37□□□□□ -0.11
Col6a4A2AX52 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a4A2AX52 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a4A2AX52 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Col6a4A2AX52 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a4A2AX52 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a4A2AX52 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col6a4A2AX52 Gm10461-201ENSMUST00000202073 4786 ntBASIC14.36□□□□□ -0.11
Col6a4A2AX52 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Col6a4A2AX52 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC14.36□□□□□ -0.11
Col6a4A2AX52 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
Col6a4A2AX52 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col6a4A2AX52 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Col6a4A2AX52 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC14.36□□□□□ -0.11
Col6a4A2AX52 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Col6a4A2AX52 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col6a4A2AX52 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC14.36□□□□□ -0.11
Col6a4A2AX52 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col6a4A2AX52 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Col6a4A2AX52 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Col6a4A2AX52 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Col6a4A2AX52 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC14.36□□□□□ -0.11
Col6a4A2AX52 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Col6a4A2AX52 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col6a4A2AX52 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col6a4A2AX52 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Col6a4A2AX52 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
Col6a4A2AX52 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC14.35□□□□□ -0.11
Col6a4A2AX52 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a4A2AX52 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC14.35□□□□□ -0.11
Col6a4A2AX52 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a4A2AX52 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a4A2AX52 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a4A2AX52 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a4A2AX52 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a4A2AX52 Vti1a-206ENSMUST00000225529 1244 ntBASIC14.35□□□□□ -0.11
Col6a4A2AX52 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a4A2AX52 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Col6a4A2AX52 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a4A2AX52 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a4A2AX52 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a4A2AX52 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC14.35□□□□□ -0.11
Col6a4A2AX52 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a4A2AX52 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a4A2AX52 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Col6a4A2AX52 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a4A2AX52 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a4A2AX52 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Col6a4A2AX52 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC14.35□□□□□ -0.11
Col6a4A2AX52 AC161829.1-201ENSMUST00000220298 281 ntBASIC14.35□□□□□ -0.11
Col6a4A2AX52 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a4A2AX52 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Col6a4A2AX52 Rps4l-201ENSMUST00000071745 943 ntBASIC14.35□□□□□ -0.11
Col6a4A2AX52 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a4A2AX52 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a4A2AX52 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a4A2AX52 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a4A2AX52 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Col6a4A2AX52 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Col6a4A2AX52 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col6a4A2AX52 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col6a4A2AX52 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC14.34□□□□□ -0.11
Col6a4A2AX52 Gm37374-201ENSMUST00000194954 1829 ntBASIC14.34□□□□□ -0.11
Col6a4A2AX52 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Col6a4A2AX52 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col6a4A2AX52 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC14.34□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms