Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Prpf40aQ9R1C7 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC18.88■□□□□ 0.61
Prpf40aQ9R1C7 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Prpf40aQ9R1C7 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Prpf40aQ9R1C7 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Prpf40aQ9R1C7 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
Prpf40aQ9R1C7 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Prpf40aQ9R1C7 Gm4974-201ENSMUST00000209974 875 ntBASIC18.87■□□□□ 0.61
Prpf40aQ9R1C7 AC175538.1-201ENSMUST00000225343 1269 ntBASIC18.87■□□□□ 0.61
Prpf40aQ9R1C7 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Prpf40aQ9R1C7 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Prpf40aQ9R1C7 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Prpf40aQ9R1C7 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Prpf40aQ9R1C7 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Prpf40aQ9R1C7 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Prpf40aQ9R1C7 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Prpf40aQ9R1C7 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Prpf40aQ9R1C7 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Prpf40aQ9R1C7 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Prpf40aQ9R1C7 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Prpf40aQ9R1C7 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
Prpf40aQ9R1C7 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Prpf40aQ9R1C7 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Prpf40aQ9R1C7 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC18.86■□□□□ 0.61
Prpf40aQ9R1C7 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Prpf40aQ9R1C7 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC18.86■□□□□ 0.61
Prpf40aQ9R1C7 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC18.86■□□□□ 0.61
Prpf40aQ9R1C7 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Prpf40aQ9R1C7 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Prpf40aQ9R1C7 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Prpf40aQ9R1C7 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Prpf40aQ9R1C7 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Prpf40aQ9R1C7 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Prpf40aQ9R1C7 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC18.86■□□□□ 0.61
Prpf40aQ9R1C7 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
Prpf40aQ9R1C7 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC18.86■□□□□ 0.61
Prpf40aQ9R1C7 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Prpf40aQ9R1C7 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Prpf40aQ9R1C7 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Prpf40aQ9R1C7 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Prpf40aQ9R1C7 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
Prpf40aQ9R1C7 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Prpf40aQ9R1C7 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Prpf40aQ9R1C7 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Prpf40aQ9R1C7 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC18.85■□□□□ 0.61
Prpf40aQ9R1C7 Gm10517-202ENSMUST00000192970 758 ntBASIC18.85■□□□□ 0.61
Prpf40aQ9R1C7 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Prpf40aQ9R1C7 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Prpf40aQ9R1C7 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Prpf40aQ9R1C7 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Prpf40aQ9R1C7 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Prpf40aQ9R1C7 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Prpf40aQ9R1C7 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Prpf40aQ9R1C7 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Prpf40aQ9R1C7 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Prpf40aQ9R1C7 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Prpf40aQ9R1C7 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC18.84■□□□□ 0.61
Prpf40aQ9R1C7 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC18.84■□□□□ 0.61
Prpf40aQ9R1C7 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Prpf40aQ9R1C7 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
Prpf40aQ9R1C7 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Prpf40aQ9R1C7 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Prpf40aQ9R1C7 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Prpf40aQ9R1C7 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Prpf40aQ9R1C7 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Prpf40aQ9R1C7 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC18.83■□□□□ 0.61
Prpf40aQ9R1C7 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Prpf40aQ9R1C7 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC18.83■□□□□ 0.61
Prpf40aQ9R1C7 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC18.83■□□□□ 0.61
Prpf40aQ9R1C7 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC18.83■□□□□ 0.61
Prpf40aQ9R1C7 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Prpf40aQ9R1C7 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Prpf40aQ9R1C7 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Prpf40aQ9R1C7 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Prpf40aQ9R1C7 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Prpf40aQ9R1C7 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC18.83■□□□□ 0.6
Prpf40aQ9R1C7 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC18.83■□□□□ 0.6
Prpf40aQ9R1C7 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC18.83■□□□□ 0.6
Prpf40aQ9R1C7 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC18.83■□□□□ 0.6
Prpf40aQ9R1C7 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Prpf40aQ9R1C7 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Prpf40aQ9R1C7 Gm43272-201ENSMUST00000200599 1584 ntBASIC18.83■□□□□ 0.6
Prpf40aQ9R1C7 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Prpf40aQ9R1C7 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Prpf40aQ9R1C7 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Prpf40aQ9R1C7 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Prpf40aQ9R1C7 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Prpf40aQ9R1C7 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Prpf40aQ9R1C7 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Prpf40aQ9R1C7 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC18.82■□□□□ 0.6
Prpf40aQ9R1C7 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Prpf40aQ9R1C7 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Prpf40aQ9R1C7 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
Prpf40aQ9R1C7 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Prpf40aQ9R1C7 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Prpf40aQ9R1C7 Gm13181-201ENSMUST00000120117 1069 ntBASIC18.82■□□□□ 0.6
Prpf40aQ9R1C7 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC18.82■□□□□ 0.6
Prpf40aQ9R1C7 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Prpf40aQ9R1C7 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Prpf40aQ9R1C7 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms