Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm37935-201ENSMUST00000192012 982 ntBASIC20.36■□□□□ 0.85
Scn11aQ9R053 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC20.36■□□□□ 0.85
Scn11aQ9R053 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC20.36■□□□□ 0.85
Scn11aQ9R053 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Scn11aQ9R053 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Scn11aQ9R053 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Scn11aQ9R053 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Scn11aQ9R053 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Scn11aQ9R053 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Scn11aQ9R053 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC20.35■□□□□ 0.85
Scn11aQ9R053 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Scn11aQ9R053 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
Scn11aQ9R053 Olfr129-201ENSMUST00000122318 993 ntBASIC20.35■□□□□ 0.85
Scn11aQ9R053 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Scn11aQ9R053 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
Scn11aQ9R053 Tfap2a-209ENSMUST00000225180 1828 ntBASIC20.35■□□□□ 0.85
Scn11aQ9R053 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC20.35■□□□□ 0.85
Scn11aQ9R053 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Scn11aQ9R053 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Scn11aQ9R053 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Scn11aQ9R053 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC20.34■□□□□ 0.85
Scn11aQ9R053 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Scn11aQ9R053 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Scn11aQ9R053 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Scn11aQ9R053 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Scn11aQ9R053 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Scn11aQ9R053 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Scn11aQ9R053 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Scn11aQ9R053 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Scn11aQ9R053 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Scn11aQ9R053 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Scn11aQ9R053 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC20.34■□□□□ 0.85
Scn11aQ9R053 Gm6623-201ENSMUST00000173570 544 ntBASIC20.34■□□□□ 0.85
Scn11aQ9R053 Mir3081-201ENSMUST00000175305 84 ntBASIC20.34■□□□□ 0.85
Scn11aQ9R053 Gm27525-201ENSMUST00000184465 107 ntBASIC20.34■□□□□ 0.85
Scn11aQ9R053 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Scn11aQ9R053 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Scn11aQ9R053 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Scn11aQ9R053 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Scn11aQ9R053 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Scn11aQ9R053 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC20.33■□□□□ 0.84
Scn11aQ9R053 Gm7063-201ENSMUST00000186840 981 ntBASIC20.33■□□□□ 0.84
Scn11aQ9R053 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Scn11aQ9R053 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Scn11aQ9R053 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Scn11aQ9R053 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scn11aQ9R053 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Scn11aQ9R053 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC20.32■□□□□ 0.84
Scn11aQ9R053 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
Scn11aQ9R053 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scn11aQ9R053 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scn11aQ9R053 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Scn11aQ9R053 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scn11aQ9R053 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scn11aQ9R053 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scn11aQ9R053 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
Scn11aQ9R053 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scn11aQ9R053 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scn11aQ9R053 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scn11aQ9R053 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scn11aQ9R053 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC20.31■□□□□ 0.84
Scn11aQ9R053 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Scn11aQ9R053 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Scn11aQ9R053 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scn11aQ9R053 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scn11aQ9R053 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scn11aQ9R053 Fcho2-208ENSMUST00000224992 2964 ntBASIC20.31■□□□□ 0.84
Scn11aQ9R053 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scn11aQ9R053 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scn11aQ9R053 Gm27742-201ENSMUST00000184667 60 ntBASIC20.31■□□□□ 0.84
Scn11aQ9R053 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scn11aQ9R053 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scn11aQ9R053 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scn11aQ9R053 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scn11aQ9R053 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scn11aQ9R053 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Scn11aQ9R053 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
Scn11aQ9R053 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC20.3■□□□□ 0.84
Scn11aQ9R053 Fam105a-203ENSMUST00000226170 3043 ntBASIC20.3■□□□□ 0.84
Scn11aQ9R053 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC20.3■□□□□ 0.84
Scn11aQ9R053 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC20.3■□□□□ 0.84
Scn11aQ9R053 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC20.3■□□□□ 0.84
Scn11aQ9R053 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scn11aQ9R053 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Scn11aQ9R053 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC20.3■□□□□ 0.84
Scn11aQ9R053 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scn11aQ9R053 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Scn11aQ9R053 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scn11aQ9R053 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scn11aQ9R053 Mir8098-201ENSMUST00000184011 137 ntBASIC20.29■□□□□ 0.84
Scn11aQ9R053 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Scn11aQ9R053 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Scn11aQ9R053 Gm43182-201ENSMUST00000199476 2528 ntBASIC20.29■□□□□ 0.84
Scn11aQ9R053 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Scn11aQ9R053 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Scn11aQ9R053 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Scn11aQ9R053 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Scn11aQ9R053 Gm13884-201ENSMUST00000118103 829 ntBASIC20.29■□□□□ 0.84
Scn11aQ9R053 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC20.29■□□□□ 0.84
Scn11aQ9R053 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC20.29■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 11.6 ms