Protein–RNA interactions for Protein: Q9JIF7

Copb1, Coatomer subunit beta, mousemouse

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Copb1Q9JIF7 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Copb1Q9JIF7 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Copb1Q9JIF7 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Copb1Q9JIF7 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Copb1Q9JIF7 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Copb1Q9JIF7 Gm45412-201ENSMUST00000210217 2275 ntBASIC18.8■□□□□ 0.6
Copb1Q9JIF7 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Copb1Q9JIF7 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Copb1Q9JIF7 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Copb1Q9JIF7 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Copb1Q9JIF7 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Copb1Q9JIF7 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Copb1Q9JIF7 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Copb1Q9JIF7 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Copb1Q9JIF7 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Copb1Q9JIF7 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Copb1Q9JIF7 Gm13158-201ENSMUST00000122007 736 ntBASIC18.79■□□□□ 0.6
Copb1Q9JIF7 Gm42545-201ENSMUST00000202755 922 ntBASIC18.79■□□□□ 0.6
Copb1Q9JIF7 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC18.79■□□□□ 0.6
Copb1Q9JIF7 Gm18025-201ENSMUST00000221733 862 ntBASIC18.79■□□□□ 0.6
Copb1Q9JIF7 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Copb1Q9JIF7 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Copb1Q9JIF7 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Copb1Q9JIF7 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC18.79■□□□□ 0.6
Copb1Q9JIF7 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Copb1Q9JIF7 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Copb1Q9JIF7 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Copb1Q9JIF7 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Copb1Q9JIF7 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Copb1Q9JIF7 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Copb1Q9JIF7 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Copb1Q9JIF7 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Copb1Q9JIF7 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Copb1Q9JIF7 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Copb1Q9JIF7 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Copb1Q9JIF7 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC18.78■□□□□ 0.6
Copb1Q9JIF7 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Copb1Q9JIF7 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Copb1Q9JIF7 Gm29257-201ENSMUST00000186115 639 ntBASIC18.78■□□□□ 0.6
Copb1Q9JIF7 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Copb1Q9JIF7 Gm10602-201ENSMUST00000098239 609 ntBASIC18.78■□□□□ 0.6
Copb1Q9JIF7 Gm26596-201ENSMUST00000180464 2655 ntBASIC18.78■□□□□ 0.6
Copb1Q9JIF7 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Copb1Q9JIF7 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Copb1Q9JIF7 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Copb1Q9JIF7 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Copb1Q9JIF7 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.6
Copb1Q9JIF7 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
Copb1Q9JIF7 Gm28265-201ENSMUST00000188201 2319 ntBASIC18.77■□□□□ 0.6
Copb1Q9JIF7 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Copb1Q9JIF7 Gm27275-201ENSMUST00000184318 272 ntBASIC18.77■□□□□ 0.6
Copb1Q9JIF7 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Copb1Q9JIF7 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Copb1Q9JIF7 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Copb1Q9JIF7 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Copb1Q9JIF7 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Copb1Q9JIF7 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Copb1Q9JIF7 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Copb1Q9JIF7 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Copb1Q9JIF7 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Copb1Q9JIF7 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Copb1Q9JIF7 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Copb1Q9JIF7 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Copb1Q9JIF7 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Copb1Q9JIF7 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Copb1Q9JIF7 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Copb1Q9JIF7 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Copb1Q9JIF7 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Copb1Q9JIF7 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC18.76■□□□□ 0.59
Copb1Q9JIF7 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Copb1Q9JIF7 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Copb1Q9JIF7 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Copb1Q9JIF7 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Copb1Q9JIF7 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC18.76■□□□□ 0.59
Copb1Q9JIF7 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Copb1Q9JIF7 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC18.76■□□□□ 0.59
Copb1Q9JIF7 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Copb1Q9JIF7 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Copb1Q9JIF7 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Copb1Q9JIF7 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Copb1Q9JIF7 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Copb1Q9JIF7 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC18.75■□□□□ 0.59
Copb1Q9JIF7 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Copb1Q9JIF7 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Copb1Q9JIF7 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Copb1Q9JIF7 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Copb1Q9JIF7 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Copb1Q9JIF7 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC18.75■□□□□ 0.59
Copb1Q9JIF7 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Copb1Q9JIF7 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Copb1Q9JIF7 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Copb1Q9JIF7 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Copb1Q9JIF7 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Copb1Q9JIF7 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Copb1Q9JIF7 Gm8839-201ENSMUST00000121279 1645 ntBASIC18.74■□□□□ 0.59
Copb1Q9JIF7 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Copb1Q9JIF7 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Copb1Q9JIF7 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Copb1Q9JIF7 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Copb1Q9JIF7 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 39.2 ms