Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cdk5rap3Q99LM2 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Cdk5rap3Q99LM2 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Cdk5rap3Q99LM2 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cdk5rap3Q99LM2 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cdk5rap3Q99LM2 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC17.79■□□□□ 0.44
Cdk5rap3Q99LM2 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
Cdk5rap3Q99LM2 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cdk5rap3Q99LM2 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC17.79■□□□□ 0.44
Cdk5rap3Q99LM2 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Cdk5rap3Q99LM2 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
Cdk5rap3Q99LM2 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC17.79■□□□□ 0.44
Cdk5rap3Q99LM2 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Cdk5rap3Q99LM2 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cdk5rap3Q99LM2 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cdk5rap3Q99LM2 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cdk5rap3Q99LM2 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cdk5rap3Q99LM2 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cdk5rap3Q99LM2 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cdk5rap3Q99LM2 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cdk5rap3Q99LM2 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cdk5rap3Q99LM2 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Cdk5rap3Q99LM2 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cdk5rap3Q99LM2 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cdk5rap3Q99LM2 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cdk5rap3Q99LM2 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cdk5rap3Q99LM2 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cdk5rap3Q99LM2 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Cdk5rap3Q99LM2 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC17.78■□□□□ 0.44
Cdk5rap3Q99LM2 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cdk5rap3Q99LM2 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cdk5rap3Q99LM2 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
Cdk5rap3Q99LM2 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC17.78■□□□□ 0.44
Cdk5rap3Q99LM2 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC17.78■□□□□ 0.44
Cdk5rap3Q99LM2 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC17.78■□□□□ 0.44
Cdk5rap3Q99LM2 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
Cdk5rap3Q99LM2 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Cdk5rap3Q99LM2 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cdk5rap3Q99LM2 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Cdk5rap3Q99LM2 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cdk5rap3Q99LM2 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Cdk5rap3Q99LM2 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Cdk5rap3Q99LM2 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Cdk5rap3Q99LM2 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Cdk5rap3Q99LM2 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Cdk5rap3Q99LM2 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Cdk5rap3Q99LM2 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Cdk5rap3Q99LM2 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
Cdk5rap3Q99LM2 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC17.77■□□□□ 0.44
Cdk5rap3Q99LM2 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC17.77■□□□□ 0.44
Cdk5rap3Q99LM2 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Cdk5rap3Q99LM2 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Cdk5rap3Q99LM2 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Cdk5rap3Q99LM2 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Cdk5rap3Q99LM2 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Cdk5rap3Q99LM2 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Cdk5rap3Q99LM2 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
Cdk5rap3Q99LM2 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Cdk5rap3Q99LM2 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Cdk5rap3Q99LM2 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Cdk5rap3Q99LM2 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Cdk5rap3Q99LM2 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Cdk5rap3Q99LM2 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdk5rap3Q99LM2 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Cdk5rap3Q99LM2 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Cdk5rap3Q99LM2 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC17.76■□□□□ 0.43
Cdk5rap3Q99LM2 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC17.76■□□□□ 0.43
Cdk5rap3Q99LM2 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Cdk5rap3Q99LM2 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC17.76■□□□□ 0.43
Cdk5rap3Q99LM2 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC17.76■□□□□ 0.43
Cdk5rap3Q99LM2 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdk5rap3Q99LM2 Gm10602-201ENSMUST00000098239 609 ntBASIC17.76■□□□□ 0.43
Cdk5rap3Q99LM2 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdk5rap3Q99LM2 Gm11841-201ENSMUST00000117060 1963 ntBASIC17.76■□□□□ 0.43
Cdk5rap3Q99LM2 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdk5rap3Q99LM2 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
Cdk5rap3Q99LM2 Haglr-201ENSMUST00000100000 2085 ntBASIC17.76■□□□□ 0.43
Cdk5rap3Q99LM2 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdk5rap3Q99LM2 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdk5rap3Q99LM2 Ddx41-204ENSMUST00000224765 2199 ntBASIC17.76■□□□□ 0.43
Cdk5rap3Q99LM2 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdk5rap3Q99LM2 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Cdk5rap3Q99LM2 Gm11620-201ENSMUST00000118770 1845 ntBASIC17.75■□□□□ 0.43
Cdk5rap3Q99LM2 Tfap2a-209ENSMUST00000225180 1828 ntBASIC17.75■□□□□ 0.43
Cdk5rap3Q99LM2 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Cdk5rap3Q99LM2 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Cdk5rap3Q99LM2 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC17.75■□□□□ 0.43
Cdk5rap3Q99LM2 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Cdk5rap3Q99LM2 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC17.75■□□□□ 0.43
Cdk5rap3Q99LM2 AC166341.7-201ENSMUST00000221698 126 ntBASIC17.75■□□□□ 0.43
Cdk5rap3Q99LM2 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Cdk5rap3Q99LM2 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Cdk5rap3Q99LM2 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Cdk5rap3Q99LM2 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Cdk5rap3Q99LM2 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Cdk5rap3Q99LM2 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Cdk5rap3Q99LM2 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Cdk5rap3Q99LM2 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Cdk5rap3Q99LM2 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Cdk5rap3Q99LM2 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 51.8 ms