Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Gm7791-201ENSMUST00000219066 539 ntBASIC20.72■□□□□ 0.91
Brf1Q8CFK2 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Brf1Q8CFK2 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Brf1Q8CFK2 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Brf1Q8CFK2 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Brf1Q8CFK2 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Brf1Q8CFK2 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Brf1Q8CFK2 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Brf1Q8CFK2 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Brf1Q8CFK2 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Brf1Q8CFK2 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Brf1Q8CFK2 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Brf1Q8CFK2 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Brf1Q8CFK2 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Brf1Q8CFK2 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Brf1Q8CFK2 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Brf1Q8CFK2 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Brf1Q8CFK2 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC20.71■□□□□ 0.91
Brf1Q8CFK2 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Brf1Q8CFK2 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Brf1Q8CFK2 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Brf1Q8CFK2 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Brf1Q8CFK2 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Brf1Q8CFK2 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Brf1Q8CFK2 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC20.7■□□□□ 0.9
Brf1Q8CFK2 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Brf1Q8CFK2 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Brf1Q8CFK2 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Brf1Q8CFK2 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Brf1Q8CFK2 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC20.7■□□□□ 0.9
Brf1Q8CFK2 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
Brf1Q8CFK2 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
Brf1Q8CFK2 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Brf1Q8CFK2 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Brf1Q8CFK2 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Brf1Q8CFK2 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Brf1Q8CFK2 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Brf1Q8CFK2 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Brf1Q8CFK2 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Brf1Q8CFK2 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Brf1Q8CFK2 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Brf1Q8CFK2 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Brf1Q8CFK2 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Brf1Q8CFK2 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Brf1Q8CFK2 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Brf1Q8CFK2 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Brf1Q8CFK2 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC20.69■□□□□ 0.9
Brf1Q8CFK2 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC20.69■□□□□ 0.9
Brf1Q8CFK2 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Brf1Q8CFK2 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Brf1Q8CFK2 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Brf1Q8CFK2 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Brf1Q8CFK2 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Brf1Q8CFK2 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Brf1Q8CFK2 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Brf1Q8CFK2 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Brf1Q8CFK2 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC20.68■□□□□ 0.9
Brf1Q8CFK2 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC20.68■□□□□ 0.9
Brf1Q8CFK2 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Brf1Q8CFK2 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
Brf1Q8CFK2 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Brf1Q8CFK2 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC20.68■□□□□ 0.9
Brf1Q8CFK2 Gm30025-201ENSMUST00000218555 728 ntBASIC20.68■□□□□ 0.9
Brf1Q8CFK2 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Brf1Q8CFK2 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
Brf1Q8CFK2 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Brf1Q8CFK2 Tfap2a-209ENSMUST00000225180 1828 ntBASIC20.68■□□□□ 0.9
Brf1Q8CFK2 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Brf1Q8CFK2 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Brf1Q8CFK2 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Brf1Q8CFK2 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Brf1Q8CFK2 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
Brf1Q8CFK2 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Brf1Q8CFK2 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Brf1Q8CFK2 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Brf1Q8CFK2 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Brf1Q8CFK2 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Brf1Q8CFK2 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
Brf1Q8CFK2 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Brf1Q8CFK2 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Brf1Q8CFK2 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Brf1Q8CFK2 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Brf1Q8CFK2 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC20.67■□□□□ 0.9
Brf1Q8CFK2 Il3ra-202ENSMUST00000223589 738 ntBASIC20.67■□□□□ 0.9
Brf1Q8CFK2 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Brf1Q8CFK2 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Brf1Q8CFK2 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Brf1Q8CFK2 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC20.67■□□□□ 0.9
Brf1Q8CFK2 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Brf1Q8CFK2 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Brf1Q8CFK2 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Brf1Q8CFK2 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Brf1Q8CFK2 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Brf1Q8CFK2 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Brf1Q8CFK2 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Brf1Q8CFK2 AC121598.2-201ENSMUST00000228376 2325 ntBASIC20.66■□□□□ 0.9
Brf1Q8CFK2 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Brf1Q8CFK2 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Brf1Q8CFK2 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Brf1Q8CFK2 Mir6982-201ENSMUST00000184354 68 ntBASIC20.66■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms