Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Vps53Q8CCB4 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC19.98■□□□□ 0.79
Vps53Q8CCB4 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
Vps53Q8CCB4 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Vps53Q8CCB4 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Vps53Q8CCB4 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
Vps53Q8CCB4 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps53Q8CCB4 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps53Q8CCB4 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps53Q8CCB4 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
Vps53Q8CCB4 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps53Q8CCB4 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC19.97■□□□□ 0.79
Vps53Q8CCB4 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC19.97■□□□□ 0.79
Vps53Q8CCB4 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC19.97■□□□□ 0.79
Vps53Q8CCB4 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC19.97■□□□□ 0.79
Vps53Q8CCB4 Gm21362-201ENSMUST00000194272 928 ntBASIC19.97■□□□□ 0.79
Vps53Q8CCB4 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC19.97■□□□□ 0.79
Vps53Q8CCB4 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Vps53Q8CCB4 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps53Q8CCB4 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps53Q8CCB4 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps53Q8CCB4 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps53Q8CCB4 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps53Q8CCB4 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Vps53Q8CCB4 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC19.97■□□□□ 0.79
Vps53Q8CCB4 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC19.97■□□□□ 0.79
Vps53Q8CCB4 AC108858.1-201ENSMUST00000228461 1498 ntBASIC19.97■□□□□ 0.79
Vps53Q8CCB4 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps53Q8CCB4 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC19.97■□□□□ 0.79
Vps53Q8CCB4 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
Vps53Q8CCB4 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps53Q8CCB4 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps53Q8CCB4 Gm7712-202ENSMUST00000222331 1510 ntBASIC19.97■□□□□ 0.79
Vps53Q8CCB4 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps53Q8CCB4 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Vps53Q8CCB4 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Vps53Q8CCB4 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Vps53Q8CCB4 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Vps53Q8CCB4 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Vps53Q8CCB4 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC19.96■□□□□ 0.79
Vps53Q8CCB4 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Vps53Q8CCB4 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC19.96■□□□□ 0.79
Vps53Q8CCB4 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC19.96■□□□□ 0.79
Vps53Q8CCB4 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Vps53Q8CCB4 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Vps53Q8CCB4 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Vps53Q8CCB4 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Vps53Q8CCB4 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Vps53Q8CCB4 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Vps53Q8CCB4 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC19.95■□□□□ 0.79
Vps53Q8CCB4 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Vps53Q8CCB4 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vps53Q8CCB4 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vps53Q8CCB4 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vps53Q8CCB4 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vps53Q8CCB4 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vps53Q8CCB4 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Vps53Q8CCB4 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vps53Q8CCB4 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vps53Q8CCB4 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vps53Q8CCB4 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vps53Q8CCB4 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vps53Q8CCB4 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Vps53Q8CCB4 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC19.95■□□□□ 0.78
Vps53Q8CCB4 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vps53Q8CCB4 Gm37194-201ENSMUST00000193092 3031 ntBASIC19.94■□□□□ 0.78
Vps53Q8CCB4 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC19.94■□□□□ 0.78
Vps53Q8CCB4 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vps53Q8CCB4 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vps53Q8CCB4 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vps53Q8CCB4 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vps53Q8CCB4 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vps53Q8CCB4 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
Vps53Q8CCB4 Gm3375-201ENSMUST00000203929 796 ntBASIC19.94■□□□□ 0.78
Vps53Q8CCB4 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Vps53Q8CCB4 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Vps53Q8CCB4 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vps53Q8CCB4 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
Vps53Q8CCB4 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vps53Q8CCB4 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Vps53Q8CCB4 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Vps53Q8CCB4 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vps53Q8CCB4 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vps53Q8CCB4 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Vps53Q8CCB4 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vps53Q8CCB4 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Vps53Q8CCB4 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Vps53Q8CCB4 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Vps53Q8CCB4 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Vps53Q8CCB4 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Vps53Q8CCB4 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Vps53Q8CCB4 Gm12382-201ENSMUST00000122005 922 ntBASIC19.93■□□□□ 0.78
Vps53Q8CCB4 Gm6659-201ENSMUST00000174752 547 ntBASIC19.93■□□□□ 0.78
Vps53Q8CCB4 Gm7889-201ENSMUST00000185591 958 ntBASIC19.93■□□□□ 0.78
Vps53Q8CCB4 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC19.93■□□□□ 0.78
Vps53Q8CCB4 Gm29791-202ENSMUST00000207888 369 ntBASIC19.93■□□□□ 0.78
Vps53Q8CCB4 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Vps53Q8CCB4 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Vps53Q8CCB4 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Vps53Q8CCB4 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms