Protein–RNA interactions for Protein: Q8C4J0

Ccdc60, Coiled-coil domain-containing protein 60, mousemouse

Predictions only

Length 545 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc60Q8C4J0 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Ccdc60Q8C4J0 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Ccdc60Q8C4J0 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC21.9■■□□□ 1.1
Ccdc60Q8C4J0 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Ccdc60Q8C4J0 Gm27463-201ENSMUST00000183569 57 ntBASIC21.9■■□□□ 1.1
Ccdc60Q8C4J0 Il3ra-202ENSMUST00000223589 738 ntBASIC21.9■■□□□ 1.1
Ccdc60Q8C4J0 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Ccdc60Q8C4J0 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
Ccdc60Q8C4J0 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
Ccdc60Q8C4J0 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Ccdc60Q8C4J0 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
Ccdc60Q8C4J0 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
Ccdc60Q8C4J0 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Ccdc60Q8C4J0 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
Ccdc60Q8C4J0 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Ccdc60Q8C4J0 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Ccdc60Q8C4J0 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC21.89■■□□□ 1.09
Ccdc60Q8C4J0 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC21.89■■□□□ 1.09
Ccdc60Q8C4J0 AC120002.2-201ENSMUST00000220205 773 ntBASIC21.89■■□□□ 1.09
Ccdc60Q8C4J0 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Ccdc60Q8C4J0 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC21.89■■□□□ 1.09
Ccdc60Q8C4J0 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Ccdc60Q8C4J0 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Ccdc60Q8C4J0 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
Ccdc60Q8C4J0 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Ccdc60Q8C4J0 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC21.88■■□□□ 1.09
Ccdc60Q8C4J0 Gm4217-201ENSMUST00000182243 1002 ntBASIC21.88■■□□□ 1.09
Ccdc60Q8C4J0 Gm43799-201ENSMUST00000201845 579 ntBASIC21.88■■□□□ 1.09
Ccdc60Q8C4J0 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Ccdc60Q8C4J0 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Ccdc60Q8C4J0 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Ccdc60Q8C4J0 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Ccdc60Q8C4J0 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Ccdc60Q8C4J0 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
Ccdc60Q8C4J0 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Ccdc60Q8C4J0 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Ccdc60Q8C4J0 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC21.87■■□□□ 1.09
Ccdc60Q8C4J0 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC21.87■■□□□ 1.09
Ccdc60Q8C4J0 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
Ccdc60Q8C4J0 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Ccdc60Q8C4J0 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
Ccdc60Q8C4J0 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
Ccdc60Q8C4J0 Gm42900-201ENSMUST00000197184 2167 ntBASIC21.87■■□□□ 1.09
Ccdc60Q8C4J0 Gm13559-201ENSMUST00000120476 863 ntBASIC21.87■■□□□ 1.09
Ccdc60Q8C4J0 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC21.87■■□□□ 1.09
Ccdc60Q8C4J0 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC21.87■■□□□ 1.09
Ccdc60Q8C4J0 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Ccdc60Q8C4J0 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Ccdc60Q8C4J0 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ccdc60Q8C4J0 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ccdc60Q8C4J0 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ccdc60Q8C4J0 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Ccdc60Q8C4J0 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
Ccdc60Q8C4J0 Gm43294-201ENSMUST00000202850 2490 ntBASIC21.86■■□□□ 1.09
Ccdc60Q8C4J0 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ccdc60Q8C4J0 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC21.86■■□□□ 1.09
Ccdc60Q8C4J0 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ccdc60Q8C4J0 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Ccdc60Q8C4J0 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ccdc60Q8C4J0 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
Ccdc60Q8C4J0 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ccdc60Q8C4J0 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC21.86■■□□□ 1.09
Ccdc60Q8C4J0 Gm43338-201ENSMUST00000198617 2223 ntBASIC21.86■■□□□ 1.09
Ccdc60Q8C4J0 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ccdc60Q8C4J0 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC21.85■■□□□ 1.09
Ccdc60Q8C4J0 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Ccdc60Q8C4J0 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Ccdc60Q8C4J0 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Ccdc60Q8C4J0 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Ccdc60Q8C4J0 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Ccdc60Q8C4J0 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Ccdc60Q8C4J0 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
Ccdc60Q8C4J0 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Ccdc60Q8C4J0 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Ccdc60Q8C4J0 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Ccdc60Q8C4J0 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
Ccdc60Q8C4J0 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Ccdc60Q8C4J0 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
Ccdc60Q8C4J0 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
Ccdc60Q8C4J0 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Ccdc60Q8C4J0 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Ccdc60Q8C4J0 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Ccdc60Q8C4J0 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
Ccdc60Q8C4J0 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ccdc60Q8C4J0 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ccdc60Q8C4J0 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ccdc60Q8C4J0 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
Ccdc60Q8C4J0 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ccdc60Q8C4J0 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Ccdc60Q8C4J0 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ccdc60Q8C4J0 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
Ccdc60Q8C4J0 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ccdc60Q8C4J0 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ccdc60Q8C4J0 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ccdc60Q8C4J0 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Ccdc60Q8C4J0 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ccdc60Q8C4J0 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ccdc60Q8C4J0 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ccdc60Q8C4J0 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Ccdc60Q8C4J0 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms