Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rnf220Q6PDX6 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rnf220Q6PDX6 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Rnf220Q6PDX6 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rnf220Q6PDX6 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rnf220Q6PDX6 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Rnf220Q6PDX6 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rnf220Q6PDX6 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rnf220Q6PDX6 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rnf220Q6PDX6 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rnf220Q6PDX6 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC16.3■□□□□ 0.2
Rnf220Q6PDX6 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rnf220Q6PDX6 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rnf220Q6PDX6 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Rnf220Q6PDX6 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rnf220Q6PDX6 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rnf220Q6PDX6 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rnf220Q6PDX6 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rnf220Q6PDX6 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rnf220Q6PDX6 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC16.3■□□□□ 0.2
Rnf220Q6PDX6 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC16.3■□□□□ 0.2
Rnf220Q6PDX6 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC16.3■□□□□ 0.2
Rnf220Q6PDX6 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC16.3■□□□□ 0.2
Rnf220Q6PDX6 Gm21168-201ENSMUST00000199646 1096 ntBASIC16.3■□□□□ 0.2
Rnf220Q6PDX6 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC16.3■□□□□ 0.2
Rnf220Q6PDX6 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rnf220Q6PDX6 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC16.3■□□□□ 0.2
Rnf220Q6PDX6 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC16.3■□□□□ 0.2
Rnf220Q6PDX6 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rnf220Q6PDX6 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Rnf220Q6PDX6 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rnf220Q6PDX6 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rnf220Q6PDX6 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
Rnf220Q6PDX6 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rnf220Q6PDX6 AC133083.1-201ENSMUST00000221736 2209 ntBASIC16.3■□□□□ 0.2
Rnf220Q6PDX6 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
Rnf220Q6PDX6 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rnf220Q6PDX6 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rnf220Q6PDX6 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf220Q6PDX6 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Rnf220Q6PDX6 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf220Q6PDX6 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf220Q6PDX6 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf220Q6PDX6 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Rnf220Q6PDX6 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC16.29■□□□□ 0.2
Rnf220Q6PDX6 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf220Q6PDX6 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf220Q6PDX6 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf220Q6PDX6 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf220Q6PDX6 Gm13146-201ENSMUST00000118508 780 ntBASIC16.29■□□□□ 0.2
Rnf220Q6PDX6 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
Rnf220Q6PDX6 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf220Q6PDX6 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf220Q6PDX6 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf220Q6PDX6 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf220Q6PDX6 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf220Q6PDX6 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf220Q6PDX6 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf220Q6PDX6 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC16.29■□□□□ 0.2
Rnf220Q6PDX6 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf220Q6PDX6 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf220Q6PDX6 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rnf220Q6PDX6 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rnf220Q6PDX6 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rnf220Q6PDX6 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rnf220Q6PDX6 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Rnf220Q6PDX6 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC16.28■□□□□ 0.2
Rnf220Q6PDX6 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC16.28■□□□□ 0.2
Rnf220Q6PDX6 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
Rnf220Q6PDX6 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Rnf220Q6PDX6 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rnf220Q6PDX6 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Rnf220Q6PDX6 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC16.28■□□□□ 0.2
Rnf220Q6PDX6 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rnf220Q6PDX6 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rnf220Q6PDX6 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rnf220Q6PDX6 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rnf220Q6PDX6 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Rnf220Q6PDX6 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rnf220Q6PDX6 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rnf220Q6PDX6 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rnf220Q6PDX6 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rnf220Q6PDX6 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rnf220Q6PDX6 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Rnf220Q6PDX6 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Rnf220Q6PDX6 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC16.27■□□□□ 0.2
Rnf220Q6PDX6 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rnf220Q6PDX6 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Rnf220Q6PDX6 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rnf220Q6PDX6 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
Rnf220Q6PDX6 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Rnf220Q6PDX6 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Rnf220Q6PDX6 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Rnf220Q6PDX6 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Rnf220Q6PDX6 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
Rnf220Q6PDX6 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Rnf220Q6PDX6 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Rnf220Q6PDX6 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Rnf220Q6PDX6 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Rnf220Q6PDX6 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms