Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sh3rf1Q69ZI1 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sh3rf1Q69ZI1 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sh3rf1Q69ZI1 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Sh3rf1Q69ZI1 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sh3rf1Q69ZI1 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Sh3rf1Q69ZI1 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
Sh3rf1Q69ZI1 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC17.39■□□□□ 0.38
Sh3rf1Q69ZI1 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.38
Sh3rf1Q69ZI1 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Sh3rf1Q69ZI1 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sh3rf1Q69ZI1 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sh3rf1Q69ZI1 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Sh3rf1Q69ZI1 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
Sh3rf1Q69ZI1 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Sh3rf1Q69ZI1 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sh3rf1Q69ZI1 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sh3rf1Q69ZI1 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Sh3rf1Q69ZI1 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sh3rf1Q69ZI1 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
Sh3rf1Q69ZI1 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sh3rf1Q69ZI1 AC125311.2-201ENSMUST00000227477 1940 ntBASIC17.39■□□□□ 0.37
Sh3rf1Q69ZI1 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sh3rf1Q69ZI1 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Sh3rf1Q69ZI1 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sh3rf1Q69ZI1 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sh3rf1Q69ZI1 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sh3rf1Q69ZI1 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sh3rf1Q69ZI1 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
Sh3rf1Q69ZI1 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC17.38■□□□□ 0.37
Sh3rf1Q69ZI1 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC17.38■□□□□ 0.37
Sh3rf1Q69ZI1 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC17.38■□□□□ 0.37
Sh3rf1Q69ZI1 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Sh3rf1Q69ZI1 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC17.38■□□□□ 0.37
Sh3rf1Q69ZI1 Gm7977-201ENSMUST00000193787 748 ntBASIC17.38■□□□□ 0.37
Sh3rf1Q69ZI1 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
Sh3rf1Q69ZI1 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sh3rf1Q69ZI1 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sh3rf1Q69ZI1 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sh3rf1Q69ZI1 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sh3rf1Q69ZI1 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC17.38■□□□□ 0.37
Sh3rf1Q69ZI1 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sh3rf1Q69ZI1 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sh3rf1Q69ZI1 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Sh3rf1Q69ZI1 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sh3rf1Q69ZI1 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sh3rf1Q69ZI1 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sh3rf1Q69ZI1 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sh3rf1Q69ZI1 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sh3rf1Q69ZI1 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sh3rf1Q69ZI1 CT010444.2-201ENSMUST00000217877 1629 ntBASIC17.37■□□□□ 0.37
Sh3rf1Q69ZI1 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Sh3rf1Q69ZI1 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Sh3rf1Q69ZI1 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sh3rf1Q69ZI1 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC17.37■□□□□ 0.37
Sh3rf1Q69ZI1 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC17.37■□□□□ 0.37
Sh3rf1Q69ZI1 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sh3rf1Q69ZI1 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sh3rf1Q69ZI1 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sh3rf1Q69ZI1 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC17.37■□□□□ 0.37
Sh3rf1Q69ZI1 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Sh3rf1Q69ZI1 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC17.37■□□□□ 0.37
Sh3rf1Q69ZI1 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sh3rf1Q69ZI1 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sh3rf1Q69ZI1 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sh3rf1Q69ZI1 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Sh3rf1Q69ZI1 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sh3rf1Q69ZI1 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sh3rf1Q69ZI1 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sh3rf1Q69ZI1 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sh3rf1Q69ZI1 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC17.36■□□□□ 0.37
Sh3rf1Q69ZI1 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sh3rf1Q69ZI1 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sh3rf1Q69ZI1 Gm15565-201ENSMUST00000118890 427 ntBASIC17.36■□□□□ 0.37
Sh3rf1Q69ZI1 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC17.36■□□□□ 0.37
Sh3rf1Q69ZI1 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Sh3rf1Q69ZI1 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC17.36■□□□□ 0.37
Sh3rf1Q69ZI1 Gm37055-201ENSMUST00000191866 133 ntBASIC17.36■□□□□ 0.37
Sh3rf1Q69ZI1 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC17.36■□□□□ 0.37
Sh3rf1Q69ZI1 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC17.36■□□□□ 0.37
Sh3rf1Q69ZI1 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sh3rf1Q69ZI1 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sh3rf1Q69ZI1 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sh3rf1Q69ZI1 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sh3rf1Q69ZI1 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sh3rf1Q69ZI1 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sh3rf1Q69ZI1 Flg-201ENSMUST00000050758 1488 ntBASIC17.36■□□□□ 0.37
Sh3rf1Q69ZI1 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sh3rf1Q69ZI1 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sh3rf1Q69ZI1 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Sh3rf1Q69ZI1 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sh3rf1Q69ZI1 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sh3rf1Q69ZI1 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sh3rf1Q69ZI1 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Sh3rf1Q69ZI1 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Sh3rf1Q69ZI1 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
Sh3rf1Q69ZI1 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sh3rf1Q69ZI1 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC17.35■□□□□ 0.37
Sh3rf1Q69ZI1 Gm11927-201ENSMUST00000118472 759 ntBASIC17.35■□□□□ 0.37
Sh3rf1Q69ZI1 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 32 ms