Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col6a1Q04857 Mir8098-201ENSMUST00000184011 137 ntBASIC18.91■□□□□ 0.62
Col6a1Q04857 Gm27459-201ENSMUST00000184860 107 ntBASIC18.91■□□□□ 0.62
Col6a1Q04857 Gm9731-201ENSMUST00000209480 747 ntBASIC18.91■□□□□ 0.62
Col6a1Q04857 Gm45328-201ENSMUST00000210942 917 ntBASIC18.91■□□□□ 0.62
Col6a1Q04857 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col6a1Q04857 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col6a1Q04857 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col6a1Q04857 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col6a1Q04857 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Col6a1Q04857 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
Col6a1Q04857 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col6a1Q04857 Gm42900-201ENSMUST00000197184 2167 ntBASIC18.91■□□□□ 0.62
Col6a1Q04857 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Col6a1Q04857 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Col6a1Q04857 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col6a1Q04857 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col6a1Q04857 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC18.9■□□□□ 0.62
Col6a1Q04857 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col6a1Q04857 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC18.9■□□□□ 0.62
Col6a1Q04857 Mir770-201ENSMUST00000103252 94 ntBASIC18.9■□□□□ 0.62
Col6a1Q04857 Gm13884-201ENSMUST00000118103 829 ntBASIC18.9■□□□□ 0.62
Col6a1Q04857 Olfr129-201ENSMUST00000122318 993 ntBASIC18.9■□□□□ 0.62
Col6a1Q04857 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC18.9■□□□□ 0.62
Col6a1Q04857 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Col6a1Q04857 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Col6a1Q04857 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col6a1Q04857 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Col6a1Q04857 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col6a1Q04857 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col6a1Q04857 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC18.89■□□□□ 0.61
Col6a1Q04857 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Col6a1Q04857 Gm3272-201ENSMUST00000181181 1229 ntBASIC18.89■□□□□ 0.61
Col6a1Q04857 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC18.89■□□□□ 0.61
Col6a1Q04857 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC18.89■□□□□ 0.61
Col6a1Q04857 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col6a1Q04857 Gm10566-201ENSMUST00000086739 996 ntBASIC18.89■□□□□ 0.61
Col6a1Q04857 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col6a1Q04857 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Col6a1Q04857 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Col6a1Q04857 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col6a1Q04857 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col6a1Q04857 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Col6a1Q04857 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col6a1Q04857 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col6a1Q04857 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col6a1Q04857 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
Col6a1Q04857 Gm37811-201ENSMUST00000192416 2601 ntBASIC18.88■□□□□ 0.61
Col6a1Q04857 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col6a1Q04857 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Col6a1Q04857 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Col6a1Q04857 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col6a1Q04857 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Col6a1Q04857 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col6a1Q04857 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col6a1Q04857 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col6a1Q04857 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Col6a1Q04857 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Col6a1Q04857 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Col6a1Q04857 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Col6a1Q04857 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC18.88■□□□□ 0.61
Col6a1Q04857 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC18.88■□□□□ 0.61
Col6a1Q04857 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Col6a1Q04857 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col6a1Q04857 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col6a1Q04857 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col6a1Q04857 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col6a1Q04857 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Col6a1Q04857 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col6a1Q04857 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Col6a1Q04857 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col6a1Q04857 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col6a1Q04857 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col6a1Q04857 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col6a1Q04857 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col6a1Q04857 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Col6a1Q04857 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col6a1Q04857 AC120002.2-201ENSMUST00000220205 773 ntBASIC18.87■□□□□ 0.61
Col6a1Q04857 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Col6a1Q04857 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col6a1Q04857 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col6a1Q04857 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col6a1Q04857 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC18.87■□□□□ 0.61
Col6a1Q04857 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col6a1Q04857 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col6a1Q04857 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC18.86■□□□□ 0.61
Col6a1Q04857 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Col6a1Q04857 Gm37722-201ENSMUST00000193757 208 ntBASIC18.86■□□□□ 0.61
Col6a1Q04857 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Col6a1Q04857 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col6a1Q04857 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC18.86■□□□□ 0.61
Col6a1Q04857 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Col6a1Q04857 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
Col6a1Q04857 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col6a1Q04857 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Col6a1Q04857 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col6a1Q04857 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Col6a1Q04857 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col6a1Q04857 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col6a1Q04857 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms