Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lig3P97386 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lig3P97386 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lig3P97386 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lig3P97386 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lig3P97386 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC18.67■□□□□ 0.58
Lig3P97386 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC18.67■□□□□ 0.58
Lig3P97386 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC18.67■□□□□ 0.58
Lig3P97386 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lig3P97386 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lig3P97386 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lig3P97386 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lig3P97386 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lig3P97386 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lig3P97386 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lig3P97386 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lig3P97386 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lig3P97386 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Lig3P97386 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Lig3P97386 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Lig3P97386 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
Lig3P97386 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lig3P97386 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
Lig3P97386 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Lig3P97386 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lig3P97386 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC18.66■□□□□ 0.58
Lig3P97386 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
Lig3P97386 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lig3P97386 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC18.66■□□□□ 0.58
Lig3P97386 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
Lig3P97386 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Lig3P97386 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lig3P97386 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lig3P97386 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lig3P97386 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Lig3P97386 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lig3P97386 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lig3P97386 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lig3P97386 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lig3P97386 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Lig3P97386 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lig3P97386 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Lig3P97386 Shroom3-211ENSMUST00000225438 5742 ntBASIC18.65■□□□□ 0.58
Lig3P97386 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Lig3P97386 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC18.65■□□□□ 0.58
Lig3P97386 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lig3P97386 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lig3P97386 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Lig3P97386 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lig3P97386 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Lig3P97386 Gm10461-201ENSMUST00000202073 4786 ntBASIC18.65■□□□□ 0.58
Lig3P97386 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Lig3P97386 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
Lig3P97386 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
Lig3P97386 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Lig3P97386 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC18.64■□□□□ 0.58
Lig3P97386 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Lig3P97386 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
Lig3P97386 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Lig3P97386 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Lig3P97386 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Lig3P97386 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lig3P97386 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lig3P97386 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lig3P97386 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lig3P97386 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lig3P97386 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Lig3P97386 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lig3P97386 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC18.64■□□□□ 0.57
Lig3P97386 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Lig3P97386 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Lig3P97386 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Lig3P97386 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Lig3P97386 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lig3P97386 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lig3P97386 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lig3P97386 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lig3P97386 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Lig3P97386 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Lig3P97386 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Lig3P97386 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Lig3P97386 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lig3P97386 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lig3P97386 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lig3P97386 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lig3P97386 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC18.63■□□□□ 0.57
Lig3P97386 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lig3P97386 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC18.63■□□□□ 0.57
Lig3P97386 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lig3P97386 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lig3P97386 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Lig3P97386 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lig3P97386 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lig3P97386 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lig3P97386 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lig3P97386 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Lig3P97386 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lig3P97386 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lig3P97386 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lig3P97386 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms