Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Rfx3P48381 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Rfx3P48381 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Rfx3P48381 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Rfx3P48381 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Rfx3P48381 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Rfx3P48381 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Rfx3P48381 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Rfx3P48381 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Rfx3P48381 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Rfx3P48381 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
Rfx3P48381 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Rfx3P48381 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Rfx3P48381 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC15.52■□□□□ 0.08
Rfx3P48381 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Rfx3P48381 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC15.52■□□□□ 0.08
Rfx3P48381 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
Rfx3P48381 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Rfx3P48381 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC15.52■□□□□ 0.07
Rfx3P48381 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Rfx3P48381 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
Rfx3P48381 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Rfx3P48381 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Rfx3P48381 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Rfx3P48381 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Rfx3P48381 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Rfx3P48381 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Rfx3P48381 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Rfx3P48381 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC15.51■□□□□ 0.07
Rfx3P48381 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Rfx3P48381 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
Rfx3P48381 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Rfx3P48381 Gm10138-203ENSMUST00000206952 366 ntBASIC15.51■□□□□ 0.07
Rfx3P48381 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Rfx3P48381 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Rfx3P48381 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Rfx3P48381 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Rfx3P48381 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Rfx3P48381 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
Rfx3P48381 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Rfx3P48381 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC15.51■□□□□ 0.07
Rfx3P48381 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Rfx3P48381 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Rfx3P48381 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Rfx3P48381 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC15.5■□□□□ 0.07
Rfx3P48381 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Rfx3P48381 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Rfx3P48381 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Rfx3P48381 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Rfx3P48381 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC15.5■□□□□ 0.07
Rfx3P48381 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Rfx3P48381 Mir2861-201ENSMUST00000175539 82 ntBASIC15.5■□□□□ 0.07
Rfx3P48381 Mir6349-201ENSMUST00000184059 97 ntBASIC15.5■□□□□ 0.07
Rfx3P48381 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC15.5■□□□□ 0.07
Rfx3P48381 AC112142.1-201ENSMUST00000228796 918 ntBASIC15.5■□□□□ 0.07
Rfx3P48381 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Rfx3P48381 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Rfx3P48381 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Rfx3P48381 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Rfx3P48381 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Rfx3P48381 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Rfx3P48381 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Rfx3P48381 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Rfx3P48381 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Rfx3P48381 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Rfx3P48381 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Rfx3P48381 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Rfx3P48381 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC15.49■□□□□ 0.07
Rfx3P48381 Gm21596-201ENSMUST00000178049 1316 ntBASIC15.49■□□□□ 0.07
Rfx3P48381 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Rfx3P48381 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Rfx3P48381 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Rfx3P48381 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC15.49■□□□□ 0.07
Rfx3P48381 Gm29241-201ENSMUST00000189260 1096 ntBASIC15.49■□□□□ 0.07
Rfx3P48381 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Rfx3P48381 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
Rfx3P48381 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Rfx3P48381 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Rfx3P48381 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Rfx3P48381 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Rfx3P48381 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
Rfx3P48381 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Rfx3P48381 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Rfx3P48381 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
Rfx3P48381 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Rfx3P48381 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC15.48■□□□□ 0.07
Rfx3P48381 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Rfx3P48381 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Rfx3P48381 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Rfx3P48381 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Rfx3P48381 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC15.48■□□□□ 0.07
Rfx3P48381 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Rfx3P48381 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
Rfx3P48381 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
Rfx3P48381 Gm12441-201ENSMUST00000121806 588 ntBASIC15.48■□□□□ 0.07
Rfx3P48381 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
Rfx3P48381 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC15.48■□□□□ 0.07
Rfx3P48381 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Rfx3P48381 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
Rfx3P48381 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 47.1 ms