Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Rfx1P48377 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Rfx1P48377 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
Rfx1P48377 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC20.53■□□□□ 0.88
Rfx1P48377 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Rfx1P48377 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Rfx1P48377 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Rfx1P48377 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Rfx1P48377 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Rfx1P48377 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC20.53■□□□□ 0.88
Rfx1P48377 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Rfx1P48377 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Rfx1P48377 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Rfx1P48377 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Rfx1P48377 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
Rfx1P48377 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
Rfx1P48377 Gm6211-202ENSMUST00000167849 925 ntBASIC20.52■□□□□ 0.88
Rfx1P48377 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC20.52■□□□□ 0.88
Rfx1P48377 Gm44549-201ENSMUST00000208351 577 ntBASIC20.52■□□□□ 0.88
Rfx1P48377 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Rfx1P48377 Mtag2-201ENSMUST00000058665 714 ntBASIC20.52■□□□□ 0.88
Rfx1P48377 Gm5874-201ENSMUST00000096101 508 ntBASIC20.52■□□□□ 0.88
Rfx1P48377 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Rfx1P48377 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Rfx1P48377 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Rfx1P48377 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Rfx1P48377 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Rfx1P48377 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rfx1P48377 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Rfx1P48377 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rfx1P48377 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rfx1P48377 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rfx1P48377 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rfx1P48377 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rfx1P48377 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rfx1P48377 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Rfx1P48377 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Rfx1P48377 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rfx1P48377 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC20.51■□□□□ 0.87
Rfx1P48377 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rfx1P48377 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rfx1P48377 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rfx1P48377 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC20.51■□□□□ 0.87
Rfx1P48377 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rfx1P48377 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rfx1P48377 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Rfx1P48377 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Rfx1P48377 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Rfx1P48377 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Rfx1P48377 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Rfx1P48377 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Rfx1P48377 Gm10418-201ENSMUST00000100943 576 ntBASIC20.5■□□□□ 0.87
Rfx1P48377 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Rfx1P48377 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC20.5■□□□□ 0.87
Rfx1P48377 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Rfx1P48377 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Rfx1P48377 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Rfx1P48377 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Rfx1P48377 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Rfx1P48377 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Rfx1P48377 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Rfx1P48377 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Rfx1P48377 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC20.5■□□□□ 0.87
Rfx1P48377 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Rfx1P48377 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC20.49■□□□□ 0.87
Rfx1P48377 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Rfx1P48377 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Rfx1P48377 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Rfx1P48377 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Rfx1P48377 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Rfx1P48377 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Rfx1P48377 Gm13216-201ENSMUST00000117145 591 ntBASIC20.49■□□□□ 0.87
Rfx1P48377 Gm42555-201ENSMUST00000199304 1039 ntBASIC20.49■□□□□ 0.87
Rfx1P48377 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Rfx1P48377 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Rfx1P48377 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Rfx1P48377 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Rfx1P48377 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Rfx1P48377 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Rfx1P48377 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Rfx1P48377 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Rfx1P48377 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Rfx1P48377 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Rfx1P48377 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC20.48■□□□□ 0.87
Rfx1P48377 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Rfx1P48377 Gm11620-201ENSMUST00000118770 1845 ntBASIC20.48■□□□□ 0.87
Rfx1P48377 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Rfx1P48377 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Rfx1P48377 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Rfx1P48377 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Rfx1P48377 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Rfx1P48377 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Rfx1P48377 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Rfx1P48377 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Rfx1P48377 Flg-201ENSMUST00000050758 1488 ntBASIC20.48■□□□□ 0.87
Rfx1P48377 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Rfx1P48377 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC20.47■□□□□ 0.87
Rfx1P48377 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Rfx1P48377 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Rfx1P48377 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms