Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Msx1P13297 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Msx1P13297 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Msx1P13297 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Msx1P13297 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Msx1P13297 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Msx1P13297 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Msx1P13297 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Msx1P13297 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Msx1P13297 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Msx1P13297 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Msx1P13297 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Msx1P13297 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Msx1P13297 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Msx1P13297 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Msx1P13297 Gm10654-201ENSMUST00000098653 1633 ntBASIC16.26■□□□□ 0.19
Msx1P13297 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Msx1P13297 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Msx1P13297 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Msx1P13297 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Msx1P13297 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Msx1P13297 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Msx1P13297 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Msx1P13297 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Msx1P13297 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC16.25■□□□□ 0.19
Msx1P13297 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
Msx1P13297 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
Msx1P13297 Gm12085-201ENSMUST00000119263 940 ntBASIC16.25■□□□□ 0.19
Msx1P13297 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC16.25■□□□□ 0.19
Msx1P13297 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC16.25■□□□□ 0.19
Msx1P13297 Gm43353-201ENSMUST00000199224 1295 ntBASIC16.25■□□□□ 0.19
Msx1P13297 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Msx1P13297 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Msx1P13297 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Msx1P13297 Gm37194-201ENSMUST00000193092 3031 ntBASIC16.25■□□□□ 0.19
Msx1P13297 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC16.25■□□□□ 0.19
Msx1P13297 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Msx1P13297 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Msx1P13297 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC16.25■□□□□ 0.19
Msx1P13297 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC16.24■□□□□ 0.19
Msx1P13297 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Msx1P13297 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Msx1P13297 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Msx1P13297 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Msx1P13297 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Msx1P13297 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC16.24■□□□□ 0.19
Msx1P13297 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC16.24■□□□□ 0.19
Msx1P13297 Gm22697-201ENSMUST00000175194 63 ntBASIC16.24■□□□□ 0.19
Msx1P13297 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Msx1P13297 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Msx1P13297 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Msx1P13297 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Msx1P13297 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC16.24■□□□□ 0.19
Msx1P13297 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Msx1P13297 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Msx1P13297 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Msx1P13297 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Msx1P13297 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Msx1P13297 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Msx1P13297 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Msx1P13297 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Msx1P13297 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Msx1P13297 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Msx1P13297 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Msx1P13297 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Msx1P13297 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Msx1P13297 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Msx1P13297 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Msx1P13297 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
Msx1P13297 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC16.23■□□□□ 0.19
Msx1P13297 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Msx1P13297 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Msx1P13297 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Msx1P13297 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC16.22■□□□□ 0.19
Msx1P13297 Gm43702-201ENSMUST00000198772 2546 ntBASIC16.22■□□□□ 0.19
Msx1P13297 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Msx1P13297 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Msx1P13297 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Msx1P13297 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
Msx1P13297 Gm25016-201ENSMUST00000158399 131 ntBASIC16.22■□□□□ 0.19
Msx1P13297 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC16.22■□□□□ 0.19
Msx1P13297 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC16.22■□□□□ 0.19
Msx1P13297 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Msx1P13297 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Msx1P13297 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Msx1P13297 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Msx1P13297 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Msx1P13297 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC16.22■□□□□ 0.19
Msx1P13297 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Msx1P13297 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC16.21■□□□□ 0.19
Msx1P13297 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Msx1P13297 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Msx1P13297 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Msx1P13297 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Msx1P13297 Gm7284-201ENSMUST00000131667 944 ntBASIC16.21■□□□□ 0.19
Msx1P13297 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Msx1P13297 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Msx1P13297 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Msx1P13297 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Msx1P13297 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms