Protein–RNA interactions for Protein: P10855

Ccl3, C-C motif chemokine 3, mousemouse

Predictions only

Length 92 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccl3P10855 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ccl3P10855 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ccl3P10855 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ccl3P10855 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ccl3P10855 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Ccl3P10855 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC15.16■□□□□ 0.02
Ccl3P10855 AC124569.2-201ENSMUST00000225998 818 ntBASIC15.16■□□□□ 0.02
Ccl3P10855 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ccl3P10855 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ccl3P10855 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Ccl3P10855 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Ccl3P10855 Grk6-206ENSMUST00000224995 2971 ntBASIC15.15■□□□□ 0.02
Ccl3P10855 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccl3P10855 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccl3P10855 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccl3P10855 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC15.15■□□□□ 0.02
Ccl3P10855 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC15.15■□□□□ 0.02
Ccl3P10855 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Ccl3P10855 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC15.15■□□□□ 0.02
Ccl3P10855 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC15.15■□□□□ 0.02
Ccl3P10855 Gm28659-201ENSMUST00000188013 759 ntBASIC15.15■□□□□ 0.02
Ccl3P10855 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Ccl3P10855 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Ccl3P10855 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Ccl3P10855 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Ccl3P10855 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Ccl3P10855 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC15.15■□□□□ 0.02
Ccl3P10855 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Ccl3P10855 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccl3P10855 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Ccl3P10855 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Ccl3P10855 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ccl3P10855 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC15.14■□□□□ 0.01
Ccl3P10855 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC15.14■□□□□ 0.01
Ccl3P10855 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ccl3P10855 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ccl3P10855 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ccl3P10855 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Ccl3P10855 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ccl3P10855 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC15.14■□□□□ 0.01
Ccl3P10855 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC15.14■□□□□ 0.01
Ccl3P10855 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC15.14■□□□□ 0.01
Ccl3P10855 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Ccl3P10855 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
Ccl3P10855 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ccl3P10855 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ccl3P10855 AC164629.2-201ENSMUST00000217916 270 ntBASIC15.14■□□□□ 0.01
Ccl3P10855 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ccl3P10855 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
Ccl3P10855 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ccl3P10855 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ccl3P10855 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ccl3P10855 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ccl3P10855 AC123834.2-201ENSMUST00000224038 2340 ntBASIC15.14■□□□□ 0.01
Ccl3P10855 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ccl3P10855 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ccl3P10855 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ccl3P10855 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ccl3P10855 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ccl3P10855 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ccl3P10855 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ccl3P10855 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ccl3P10855 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC15.13■□□□□ 0.01
Ccl3P10855 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC15.13■□□□□ 0.01
Ccl3P10855 Gm12895-201ENSMUST00000122214 226 ntBASIC15.13■□□□□ 0.01
Ccl3P10855 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ccl3P10855 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC15.13■□□□□ 0.01
Ccl3P10855 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ccl3P10855 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ccl3P10855 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ccl3P10855 Dmtn-210ENSMUST00000228824 2377 ntBASIC15.13■□□□□ 0.01
Ccl3P10855 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ccl3P10855 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ccl3P10855 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Ccl3P10855 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ccl3P10855 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ccl3P10855 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ccl3P10855 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ccl3P10855 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ccl3P10855 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ccl3P10855 Gm13186-201ENSMUST00000118031 316 ntBASIC15.12■□□□□ 0.01
Ccl3P10855 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ccl3P10855 Gm27459-201ENSMUST00000184860 107 ntBASIC15.12■□□□□ 0.01
Ccl3P10855 Gm5864-201ENSMUST00000202263 970 ntBASIC15.12■□□□□ 0.01
Ccl3P10855 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ccl3P10855 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ccl3P10855 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ccl3P10855 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ccl3P10855 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC15.12■□□□□ 0.01
Ccl3P10855 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ccl3P10855 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ccl3P10855 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ccl3P10855 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ccl3P10855 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Ccl3P10855 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Ccl3P10855 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ccl3P10855 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC15.11■□□□□ 0.01
Ccl3P10855 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ccl3P10855 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Ccl3P10855 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms