Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hoxd3P09027 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hoxd3P09027 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
Hoxd3P09027 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hoxd3P09027 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hoxd3P09027 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC13.34□□□□□ -0.27
Hoxd3P09027 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hoxd3P09027 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Hoxd3P09027 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Hoxd3P09027 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Hoxd3P09027 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Hoxd3P09027 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC13.33□□□□□ -0.28
Hoxd3P09027 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Hoxd3P09027 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Hoxd3P09027 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC13.33□□□□□ -0.28
Hoxd3P09027 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Hoxd3P09027 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Hoxd3P09027 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Hoxd3P09027 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Hoxd3P09027 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Hoxd3P09027 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Hoxd3P09027 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Hoxd3P09027 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Hoxd3P09027 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Hoxd3P09027 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC13.33□□□□□ -0.28
Hoxd3P09027 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Hoxd3P09027 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
Hoxd3P09027 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Hoxd3P09027 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Hoxd3P09027 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Hoxd3P09027 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Hoxd3P09027 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
Hoxd3P09027 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Hoxd3P09027 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Hoxd3P09027 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Hoxd3P09027 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Hoxd3P09027 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Hoxd3P09027 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Hoxd3P09027 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Hoxd3P09027 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC13.32□□□□□ -0.28
Hoxd3P09027 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC13.32□□□□□ -0.28
Hoxd3P09027 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Hoxd3P09027 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Hoxd3P09027 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Hoxd3P09027 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC13.32□□□□□ -0.28
Hoxd3P09027 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Hoxd3P09027 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Hoxd3P09027 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Hoxd3P09027 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Hoxd3P09027 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Hoxd3P09027 Gm43272-201ENSMUST00000200599 1584 ntBASIC13.32□□□□□ -0.28
Hoxd3P09027 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Hoxd3P09027 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Hoxd3P09027 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Hoxd3P09027 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Hoxd3P09027 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Hoxd3P09027 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Hoxd3P09027 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Hoxd3P09027 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Hoxd3P09027 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Hoxd3P09027 Gm13323-201ENSMUST00000120245 1151 ntBASIC13.31□□□□□ -0.28
Hoxd3P09027 Gm16061-201ENSMUST00000122167 857 ntBASIC13.31□□□□□ -0.28
Hoxd3P09027 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Hoxd3P09027 Gm4217-201ENSMUST00000182243 1002 ntBASIC13.31□□□□□ -0.28
Hoxd3P09027 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Hoxd3P09027 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Hoxd3P09027 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Hoxd3P09027 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC13.31□□□□□ -0.28
Hoxd3P09027 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
Hoxd3P09027 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Hoxd3P09027 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Hoxd3P09027 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Hoxd3P09027 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Hoxd3P09027 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Hoxd3P09027 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Hoxd3P09027 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Hoxd3P09027 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Hoxd3P09027 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Hoxd3P09027 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Hoxd3P09027 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Hoxd3P09027 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Hoxd3P09027 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC13.31□□□□□ -0.28
Hoxd3P09027 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Hoxd3P09027 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Hoxd3P09027 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Hoxd3P09027 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Hoxd3P09027 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Hoxd3P09027 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Hoxd3P09027 Gm13474-201ENSMUST00000122466 815 ntBASIC13.3□□□□□ -0.28
Hoxd3P09027 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC13.3□□□□□ -0.28
Hoxd3P09027 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Hoxd3P09027 Il3ra-202ENSMUST00000223589 738 ntBASIC13.3□□□□□ -0.28
Hoxd3P09027 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Hoxd3P09027 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Hoxd3P09027 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Hoxd3P09027 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC13.3□□□□□ -0.28
Hoxd3P09027 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Hoxd3P09027 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Hoxd3P09027 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Hoxd3P09027 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 52.7 ms