Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col4a1P02463 AL590614.2-201ENSMUST00000225374 1937 ntBASIC21.12■□□□□ 0.97
Col4a1P02463 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col4a1P02463 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
Col4a1P02463 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Col4a1P02463 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col4a1P02463 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC21.12■□□□□ 0.97
Col4a1P02463 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col4a1P02463 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col4a1P02463 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
Col4a1P02463 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col4a1P02463 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col4a1P02463 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Col4a1P02463 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Col4a1P02463 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col4a1P02463 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC21.11■□□□□ 0.97
Col4a1P02463 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col4a1P02463 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col4a1P02463 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col4a1P02463 Gm5112-201ENSMUST00000204407 2368 ntBASIC21.1■□□□□ 0.97
Col4a1P02463 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col4a1P02463 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Col4a1P02463 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Col4a1P02463 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Col4a1P02463 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col4a1P02463 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Col4a1P02463 Gm42939-201ENSMUST00000197514 2205 ntBASIC21.09■□□□□ 0.97
Col4a1P02463 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col4a1P02463 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
Col4a1P02463 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC21.09■□□□□ 0.97
Col4a1P02463 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col4a1P02463 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col4a1P02463 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col4a1P02463 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Col4a1P02463 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col4a1P02463 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC21.09■□□□□ 0.97
Col4a1P02463 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC21.09■□□□□ 0.97
Col4a1P02463 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col4a1P02463 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col4a1P02463 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col4a1P02463 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Col4a1P02463 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Col4a1P02463 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC21.09■□□□□ 0.97
Col4a1P02463 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col4a1P02463 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col4a1P02463 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Col4a1P02463 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC21.08■□□□□ 0.97
Col4a1P02463 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col4a1P02463 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Col4a1P02463 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC21.08■□□□□ 0.96
Col4a1P02463 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Col4a1P02463 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC21.08■□□□□ 0.96
Col4a1P02463 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC21.08■□□□□ 0.96
Col4a1P02463 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col4a1P02463 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col4a1P02463 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
Col4a1P02463 Zcchc6-207ENSMUST00000225576 2499 ntBASIC21.07■□□□□ 0.96
Col4a1P02463 Gm37194-201ENSMUST00000193092 3031 ntBASIC21.07■□□□□ 0.96
Col4a1P02463 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col4a1P02463 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Col4a1P02463 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC21.07■□□□□ 0.96
Col4a1P02463 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC21.07■□□□□ 0.96
Col4a1P02463 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC21.07■□□□□ 0.96
Col4a1P02463 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col4a1P02463 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col4a1P02463 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Col4a1P02463 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col4a1P02463 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
Col4a1P02463 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Col4a1P02463 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col4a1P02463 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Col4a1P02463 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col4a1P02463 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col4a1P02463 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col4a1P02463 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Col4a1P02463 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col4a1P02463 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col4a1P02463 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Col4a1P02463 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Col4a1P02463 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
Col4a1P02463 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Col4a1P02463 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col4a1P02463 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
Col4a1P02463 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col4a1P02463 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col4a1P02463 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC21.05■□□□□ 0.96
Col4a1P02463 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col4a1P02463 Tfap2a-209ENSMUST00000225180 1828 ntBASIC21.05■□□□□ 0.96
Col4a1P02463 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col4a1P02463 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col4a1P02463 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col4a1P02463 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col4a1P02463 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col4a1P02463 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC21.05■□□□□ 0.96
Col4a1P02463 Gm5864-201ENSMUST00000202263 970 ntBASIC21.05■□□□□ 0.96
Col4a1P02463 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col4a1P02463 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col4a1P02463 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Col4a1P02463 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col4a1P02463 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms