Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb3O54879 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Hmgb3O54879 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Hmgb3O54879 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb3O54879 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb3O54879 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC14.29□□□□□ -0.12
Hmgb3O54879 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
Hmgb3O54879 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb3O54879 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb3O54879 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb3O54879 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb3O54879 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Hmgb3O54879 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb3O54879 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb3O54879 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb3O54879 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC14.28□□□□□ -0.12
Hmgb3O54879 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb3O54879 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Hmgb3O54879 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb3O54879 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb3O54879 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb3O54879 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb3O54879 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC14.28□□□□□ -0.12
Hmgb3O54879 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC14.28□□□□□ -0.12
Hmgb3O54879 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb3O54879 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Hmgb3O54879 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC14.28□□□□□ -0.12
Hmgb3O54879 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb3O54879 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb3O54879 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb3O54879 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb3O54879 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb3O54879 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb3O54879 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb3O54879 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb3O54879 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb3O54879 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb3O54879 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
Hmgb3O54879 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC14.28□□□□□ -0.12
Hmgb3O54879 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Hmgb3O54879 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Hmgb3O54879 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC14.27□□□□□ -0.12
Hmgb3O54879 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Hmgb3O54879 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC14.27□□□□□ -0.12
Hmgb3O54879 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Hmgb3O54879 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Hmgb3O54879 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Hmgb3O54879 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Hmgb3O54879 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Hmgb3O54879 Gm28265-201ENSMUST00000188201 2319 ntBASIC14.27□□□□□ -0.13
Hmgb3O54879 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Hmgb3O54879 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Hmgb3O54879 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Hmgb3O54879 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Hmgb3O54879 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Hmgb3O54879 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Hmgb3O54879 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Hmgb3O54879 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC14.26□□□□□ -0.13
Hmgb3O54879 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
Hmgb3O54879 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Hmgb3O54879 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Hmgb3O54879 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Hmgb3O54879 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC14.26□□□□□ -0.13
Hmgb3O54879 Iws1-201ENSMUST00000025243 9613 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Hmgb3O54879 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Hmgb3O54879 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Hmgb3O54879 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Hmgb3O54879 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Hmgb3O54879 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Hmgb3O54879 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC14.26□□□□□ -0.13
Hmgb3O54879 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Hmgb3O54879 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Hmgb3O54879 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Hmgb3O54879 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Hmgb3O54879 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Hmgb3O54879 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC14.26□□□□□ -0.13
Hmgb3O54879 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Hmgb3O54879 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Hmgb3O54879 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC14.26□□□□□ -0.13
Hmgb3O54879 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Hmgb3O54879 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Hmgb3O54879 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Hmgb3O54879 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Hmgb3O54879 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Hmgb3O54879 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC14.25□□□□□ -0.13
Hmgb3O54879 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC14.25□□□□□ -0.13
Hmgb3O54879 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hmgb3O54879 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Hmgb3O54879 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC14.25□□□□□ -0.13
Hmgb3O54879 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hmgb3O54879 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hmgb3O54879 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Hmgb3O54879 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Hmgb3O54879 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC14.25□□□□□ -0.13
Hmgb3O54879 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Hmgb3O54879 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hmgb3O54879 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC14.25□□□□□ -0.13
Hmgb3O54879 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
Hmgb3O54879 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Hmgb3O54879 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms