Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm12711-201ENSMUST00000131249 340 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
Rnf40Q3U319 Gm11376-201ENSMUST00000144541 231 ntTSL 5 BASIC5.31□□□□□ -1.56
Rnf40Q3U319 Gm16354-201ENSMUST00000155376 150 ntBASIC5.31□□□□□ -1.56
Rnf40Q3U319 Gm25439-201ENSMUST00000158280 131 ntBASIC5.31□□□□□ -1.56
Rnf40Q3U319 Gm27754-201ENSMUST00000183340 126 ntBASIC5.31□□□□□ -1.56
Rnf40Q3U319 Gm44239-201ENSMUST00000204228 271 ntBASIC5.31□□□□□ -1.56
Rnf40Q3U319 AC171203.1-201ENSMUST00000215363 456 ntTSL 5 BASIC5.31□□□□□ -1.56
Rnf40Q3U319 CT009713.4-201ENSMUST00000224246 272 ntBASIC5.31□□□□□ -1.56
Rnf40Q3U319 Gm5612-201ENSMUST00000053326 375 ntBASIC5.31□□□□□ -1.56
Rnf40Q3U319 Mir298-201ENSMUST00000083476 82 ntBASIC5.31□□□□□ -1.56
Rnf40Q3U319 Gm25896-201ENSMUST00000083713 136 ntBASIC5.31□□□□□ -1.56
Rnf40Q3U319 Usf3-204ENSMUST00000169582 12604 ntAPPRIS P2 TSL 5 BASIC5.31□□□□□ -1.56
Rnf40Q3U319 Nop58-215ENSMUST00000191142 9507 ntAPPRIS P2 TSL 1 (best) BASIC5.31□□□□□ -1.56
Rnf40Q3U319 Elavl4-204ENSMUST00000106598 3997 ntAPPRIS ALT1 TSL 5 BASIC5.31□□□□□ -1.56
Rnf40Q3U319 Slc15a2-201ENSMUST00000023616 3993 ntAPPRIS P2 TSL 1 (best) BASIC5.31□□□□□ -1.56
Rnf40Q3U319 Ktn1-201ENSMUST00000022391 4484 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
Rnf40Q3U319 Olfr330-202ENSMUST00000213188 2836 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
Rnf40Q3U319 Vmn1r178-204ENSMUST00000226640 2282 ntBASIC5.31□□□□□ -1.56
Rnf40Q3U319 Olfr103-202ENSMUST00000173472 3079 ntAPPRIS P1 TSL 3 BASIC5.31□□□□□ -1.56
Rnf40Q3U319 Gm38010-201ENSMUST00000192592 2784 ntBASIC5.31□□□□□ -1.56
Rnf40Q3U319 Olfr653-202ENSMUST00000215585 4765 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
Rnf40Q3U319 Olfr653-203ENSMUST00000217466 4786 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
Rnf40Q3U319 Vps13d-202ENSMUST00000036579 15849 ntAPPRIS P2 TSL 5 BASIC5.3□□□□□ -1.56
Rnf40Q3U319 Cep290-201ENSMUST00000164751 8006 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
Rnf40Q3U319 Vmn1r171-206ENSMUST00000227386 2570 ntAPPRIS ALT2 BASIC5.3□□□□□ -1.56
Rnf40Q3U319 Vmn1r171-208ENSMUST00000227866 2566 ntAPPRIS ALT2 BASIC5.3□□□□□ -1.56
Rnf40Q3U319 Oog1-201ENSMUST00000095509 1801 ntAPPRIS P2 TSL 1 (best) BASIC5.3□□□□□ -1.56
Rnf40Q3U319 Olfr535-207ENSMUST00000217235 5186 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
Rnf40Q3U319 Agbl1-201ENSMUST00000026854 3452 ntAPPRIS ALT2 TSL 2 BASIC5.3□□□□□ -1.56
Rnf40Q3U319 AC122382.2-201ENSMUST00000225128 3602 ntBASIC5.3□□□□□ -1.56
Rnf40Q3U319 Traj2-201ENSMUST00000103738 66 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
Rnf40Q3U319 Gm12261-201ENSMUST00000117499 645 ntBASIC5.3□□□□□ -1.56
Rnf40Q3U319 Gm14516-201ENSMUST00000120012 252 ntBASIC5.3□□□□□ -1.56
Rnf40Q3U319 Gm24213-201ENSMUST00000158255 258 ntBASIC5.3□□□□□ -1.56
Rnf40Q3U319 Gm22655-201ENSMUST00000174949 96 ntBASIC5.3□□□□□ -1.56
Rnf40Q3U319 Gm22411-201ENSMUST00000175462 126 ntBASIC5.3□□□□□ -1.56
Rnf40Q3U319 Gm22002-201ENSMUST00000175622 125 ntBASIC5.3□□□□□ -1.56
Rnf40Q3U319 Gm6055-201ENSMUST00000180532 378 ntBASIC5.3□□□□□ -1.56
Rnf40Q3U319 Rhoay-ps2-201ENSMUST00000186362 581 ntBASIC5.3□□□□□ -1.56
Rnf40Q3U319 Gm2325-201ENSMUST00000186637 581 ntBASIC5.3□□□□□ -1.56
Rnf40Q3U319 Gm29610-201ENSMUST00000187749 453 ntBASIC5.3□□□□□ -1.56
Rnf40Q3U319 Gm29428-201ENSMUST00000190086 409 ntBASIC5.3□□□□□ -1.56
Rnf40Q3U319 Gm43649-201ENSMUST00000196596 391 ntBASIC5.3□□□□□ -1.56
Rnf40Q3U319 Gm42990-201ENSMUST00000199231 312 ntBASIC5.3□□□□□ -1.56
Rnf40Q3U319 Gm44485-201ENSMUST00000199569 137 ntBASIC5.3□□□□□ -1.56
Rnf40Q3U319 Gm44312-201ENSMUST00000203536 469 ntBASIC5.3□□□□□ -1.56
Rnf40Q3U319 Gm3333-201ENSMUST00000221637 452 ntTSL 5 BASIC5.3□□□□□ -1.56
Rnf40Q3U319 AC126554.2-201ENSMUST00000223259 400 ntBASIC5.3□□□□□ -1.56
Rnf40Q3U319 CT030645.1-201ENSMUST00000224020 231 ntBASIC5.3□□□□□ -1.56
Rnf40Q3U319 AC166574.7-201ENSMUST00000228502 704 ntBASIC5.3□□□□□ -1.56
Rnf40Q3U319 Gm21032-201ENSMUST00000208108 2578 ntBASIC5.3□□□□□ -1.56
Rnf40Q3U319 Vmn2r24-201ENSMUST00000075095 2565 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
Rnf40Q3U319 Gm43654-201ENSMUST00000200664 3417 ntBASIC5.3□□□□□ -1.56
Rnf40Q3U319 Gm43320-201ENSMUST00000196047 2916 ntBASIC5.3□□□□□ -1.56
Rnf40Q3U319 Gm42559-201ENSMUST00000201811 3532 ntBASIC5.3□□□□□ -1.56
Rnf40Q3U319 AC091683.1-201ENSMUST00000222307 2446 ntBASIC5.29□□□□□ -1.56
Rnf40Q3U319 4930579C12Rik-202ENSMUST00000187015 3676 ntTSL 2 BASIC5.29□□□□□ -1.56
Rnf40Q3U319 Tlr6-201ENSMUST00000062315 3677 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
Rnf40Q3U319 AI481877-201ENSMUST00000107547 4664 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
Rnf40Q3U319 Olfr148-202ENSMUST00000216801 2775 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
Rnf40Q3U319 Pcsk2os2-201ENSMUST00000153878 3370 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
Rnf40Q3U319 Olfr1274-ps-202ENSMUST00000216111 3395 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
Rnf40Q3U319 9630002D21Rik-202ENSMUST00000222033 2345 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
Rnf40Q3U319 AC133076.2-201ENSMUST00000227678 3532 ntBASIC5.29□□□□□ -1.56
Rnf40Q3U319 AC154462.1-201ENSMUST00000228897 2260 ntBASIC5.29□□□□□ -1.56
Rnf40Q3U319 Gm45662-201ENSMUST00000210054 2098 ntBASIC5.29□□□□□ -1.56
Rnf40Q3U319 Rps15a-ps4-201ENSMUST00000119415 392 ntBASIC5.29□□□□□ -1.56
Rnf40Q3U319 Scarna13-201ENSMUST00000158164 275 ntBASIC5.29□□□□□ -1.56
Rnf40Q3U319 Gm26169-201ENSMUST00000158420 135 ntBASIC5.29□□□□□ -1.56
Rnf40Q3U319 Gm22139-201ENSMUST00000158747 105 ntBASIC5.29□□□□□ -1.56
Rnf40Q3U319 Gm22476-201ENSMUST00000158902 100 ntBASIC5.29□□□□□ -1.56
Rnf40Q3U319 Gm16164-201ENSMUST00000160078 468 ntBASIC5.29□□□□□ -1.56
Rnf40Q3U319 Gm25246-201ENSMUST00000175476 69 ntBASIC5.29□□□□□ -1.56
Rnf40Q3U319 Gm22775-201ENSMUST00000177630 120 ntBASIC5.29□□□□□ -1.56
Rnf40Q3U319 Gm24926-201ENSMUST00000178053 79 ntBASIC5.29□□□□□ -1.56
Rnf40Q3U319 Gm22632-201ENSMUST00000178266 79 ntBASIC5.29□□□□□ -1.56
Rnf40Q3U319 Gm23569-201ENSMUST00000180120 120 ntBASIC5.29□□□□□ -1.56
Rnf40Q3U319 Cox6b2-209ENSMUST00000184143 435 ntTSL 2 BASIC5.29□□□□□ -1.56
Rnf40Q3U319 Ighv3-4-201ENSMUST00000193408 353 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
Rnf40Q3U319 Gm37445-201ENSMUST00000195318 242 ntBASIC5.29□□□□□ -1.56
Rnf40Q3U319 Gm43955-201ENSMUST00000204332 142 ntBASIC5.29□□□□□ -1.56
Rnf40Q3U319 Gm6240-201ENSMUST00000208014 473 ntBASIC5.29□□□□□ -1.56
Rnf40Q3U319 AC153979.1-201ENSMUST00000219684 242 ntTSL 5 BASIC5.29□□□□□ -1.56
Rnf40Q3U319 Gm9512-201ENSMUST00000223112 497 ntBASIC5.29□□□□□ -1.56
Rnf40Q3U319 AC166056.1-201ENSMUST00000223139 441 ntTSL 5 BASIC5.29□□□□□ -1.56
Rnf40Q3U319 CT010486.1-201ENSMUST00000224609 422 ntBASIC5.29□□□□□ -1.56
Rnf40Q3U319 Gm22509-201ENSMUST00000082775 107 ntBASIC5.29□□□□□ -1.56
Rnf40Q3U319 Gm22126-201ENSMUST00000083244 142 ntBASIC5.29□□□□□ -1.56
Rnf40Q3U319 n-R5s3-201ENSMUST00000083879 112 ntBASIC5.29□□□□□ -1.56
Rnf40Q3U319 Kncn-201ENSMUST00000097918 951 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
Rnf40Q3U319 6720427I07Rik-201ENSMUST00000181490 2300 ntBASIC5.29□□□□□ -1.56
Rnf40Q3U319 Oog2-201ENSMUST00000080405 1917 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
Rnf40Q3U319 Il12rb2-202ENSMUST00000117441 2600 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
Rnf40Q3U319 Cul3-202ENSMUST00000164108 2442 ntTSL 5 BASIC5.28□□□□□ -1.56
Rnf40Q3U319 Apob-202ENSMUST00000037811 13934 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
Rnf40Q3U319 Macf1-205ENSMUST00000106220 17608 ntTSL 5 BASIC5.28□□□□□ -1.56
Rnf40Q3U319 Mir676-201ENSMUST00000102443 89 ntBASIC5.28□□□□□ -1.56
Rnf40Q3U319 Gm12039-201ENSMUST00000118219 180 ntBASIC5.28□□□□□ -1.56
Rnf40Q3U319 Gm13273-201ENSMUST00000119737 159 ntBASIC5.28□□□□□ -1.56
Rnf40Q3U319 Tra2b-ps-201ENSMUST00000119906 168 ntBASIC5.28□□□□□ -1.56
Retrieved 100 of 76,532 protein–RNA pairs in 88 ms