Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Xirp2-201ENSMUST00000028410 11955 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
Trim56Q80VI1 Nlrp4b-202ENSMUST00000117413 3326 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
Trim56Q80VI1 Igkv1-131-201ENSMUST00000103306 362 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
Trim56Q80VI1 Gm24788-201ENSMUST00000104283 156 ntBASIC5.05□□□□□ -1.6
Trim56Q80VI1 Gm26019-201ENSMUST00000104407 119 ntBASIC5.05□□□□□ -1.6
Trim56Q80VI1 H2al1n-201ENSMUST00000105137 514 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
Trim56Q80VI1 Gm14401-201ENSMUST00000108968 247 ntTSL 5 BASIC5.05□□□□□ -1.6
Trim56Q80VI1 Gm8666-201ENSMUST00000117517 292 ntBASIC5.05□□□□□ -1.6
Trim56Q80VI1 Gm12311-201ENSMUST00000118803 374 ntBASIC5.05□□□□□ -1.6
Trim56Q80VI1 n-R5s80-201ENSMUST00000122596 111 ntBASIC5.05□□□□□ -1.6
Trim56Q80VI1 Olfr406-201ENSMUST00000133561 1101 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
Trim56Q80VI1 Gm29247-202ENSMUST00000148542 571 ntTSL 2 BASIC5.05□□□□□ -1.6
Trim56Q80VI1 Gm22277-201ENSMUST00000157204 277 ntBASIC5.05□□□□□ -1.6
Trim56Q80VI1 Gm20484-201ENSMUST00000173738 231 ntTSL 2 BASIC5.05□□□□□ -1.6
Trim56Q80VI1 Gm9830-201ENSMUST00000178509 357 ntBASIC5.05□□□□□ -1.6
Trim56Q80VI1 Mir6391-201ENSMUST00000184391 104 ntBASIC5.05□□□□□ -1.6
Trim56Q80VI1 Mir6943-201ENSMUST00000185186 66 ntBASIC5.05□□□□□ -1.6
Trim56Q80VI1 Gm29009-201ENSMUST00000186340 496 ntTSL 5 BASIC5.05□□□□□ -1.6
Trim56Q80VI1 Gm6802-202ENSMUST00000186566 126 ntBASIC5.05□□□□□ -1.6
Trim56Q80VI1 Gm29428-201ENSMUST00000190086 409 ntBASIC5.05□□□□□ -1.6
Trim56Q80VI1 1700020G17Rik-204ENSMUST00000191429 622 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
Trim56Q80VI1 1700011C11Rik-201ENSMUST00000205268 365 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
Trim56Q80VI1 2200007N16Rik-201ENSMUST00000206367 238 ntBASIC5.05□□□□□ -1.6
Trim56Q80VI1 Gm45686-201ENSMUST00000210259 460 ntTSL 5 BASIC5.05□□□□□ -1.6
Trim56Q80VI1 Gm39197-201ENSMUST00000212069 457 ntBASIC5.05□□□□□ -1.6
Trim56Q80VI1 2900042G08Rik-201ENSMUST00000221776 650 ntBASIC5.05□□□□□ -1.6
Trim56Q80VI1 Gm23928-201ENSMUST00000082469 145 ntBASIC5.05□□□□□ -1.6
Trim56Q80VI1 2610300M13Rik-202ENSMUST00000203716 1787 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
Trim56Q80VI1 Agtr2-201ENSMUST00000089188 3283 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
Trim56Q80VI1 F9-201ENSMUST00000033477 2734 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
Trim56Q80VI1 Cnot6l-202ENSMUST00000113005 3170 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
Trim56Q80VI1 Jpx-201ENSMUST00000181020 3802 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
Trim56Q80VI1 Olfr705-202ENSMUST00000213721 3001 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
Trim56Q80VI1 Olfr291-202ENSMUST00000217039 3471 ntAPPRIS ALT2 TSL 2 BASIC5.04□□□□□ -1.6
Trim56Q80VI1 Gm43065-201ENSMUST00000198971 2092 ntBASIC5.04□□□□□ -1.6
Trim56Q80VI1 Gm37387-201ENSMUST00000192201 1806 ntBASIC5.04□□□□□ -1.6
Trim56Q80VI1 Olfr211-202ENSMUST00000203700 4880 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
Trim56Q80VI1 Btbd35f17-201ENSMUST00000105014 1960 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
Trim56Q80VI1 Vmn1r197-203ENSMUST00000227017 5158 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
Trim56Q80VI1 Gm19744-204ENSMUST00000188936 4533 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
Trim56Q80VI1 Gm25624-201ENSMUST00000157222 275 ntBASIC5.04□□□□□ -1.6
Trim56Q80VI1 Gm23499-201ENSMUST00000157736 268 ntBASIC5.04□□□□□ -1.6
Trim56Q80VI1 Gm24520-201ENSMUST00000179510 110 ntBASIC5.04□□□□□ -1.6
Trim56Q80VI1 1700015G11Rik-203ENSMUST00000185841 305 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
Trim56Q80VI1 Gm36934-201ENSMUST00000192007 306 ntBASIC5.04□□□□□ -1.6
Trim56Q80VI1 Gm37128-201ENSMUST00000192599 232 ntBASIC5.04□□□□□ -1.6
Trim56Q80VI1 Gm35702-201ENSMUST00000198653 511 ntBASIC5.04□□□□□ -1.6
Trim56Q80VI1 Gm45434-201ENSMUST00000210550 293 ntBASIC5.04□□□□□ -1.6
Trim56Q80VI1 Olfr673-ps1-201ENSMUST00000210859 411 ntBASIC5.04□□□□□ -1.6
Trim56Q80VI1 9330159F19Rik-202ENSMUST00000213489 2992 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
Trim56Q80VI1 CT030182.3-201ENSMUST00000225986 582 ntBASIC5.04□□□□□ -1.6
Trim56Q80VI1 AC154738.5-201ENSMUST00000227397 310 ntBASIC5.04□□□□□ -1.6
Trim56Q80VI1 Sprr2i-201ENSMUST00000047264 617 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
Trim56Q80VI1 Cdh7-209ENSMUST00000172005 3353 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
Trim56Q80VI1 Fnbp1l-203ENSMUST00000162947 1830 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
Trim56Q80VI1 Vmn1r39-203ENSMUST00000227285 2245 ntAPPRIS ALT2 BASIC5.04□□□□□ -1.6
Trim56Q80VI1 Zfp62-201ENSMUST00000061757 3852 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
Trim56Q80VI1 Gm42991-201ENSMUST00000196468 3837 ntBASIC5.03□□□□□ -1.6
Trim56Q80VI1 A630033H20Rik-201ENSMUST00000067249 3004 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
Trim56Q80VI1 Gm7173-201ENSMUST00000101410 2832 ntAPPRIS P4 TSL 5 BASIC5.03□□□□□ -1.6
Trim56Q80VI1 Gm14429-201ENSMUST00000121881 2024 ntBASIC5.03□□□□□ -1.6
Trim56Q80VI1 Zfp759-201ENSMUST00000052716 3482 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
Trim56Q80VI1 Vmn1r171-204ENSMUST00000226733 2918 ntAPPRIS ALT2 BASIC5.03□□□□□ -1.6
Trim56Q80VI1 Zscan4f-202ENSMUST00000145237 1829 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
Trim56Q80VI1 Cep290-201ENSMUST00000164751 8006 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
Trim56Q80VI1 Igkv1-135-201ENSMUST00000103303 394 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
Trim56Q80VI1 Scgb1b24-201ENSMUST00000108087 279 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
Trim56Q80VI1 Apool-202ENSMUST00000113415 783 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
Trim56Q80VI1 Gm11923-201ENSMUST00000118135 508 ntBASIC5.03□□□□□ -1.6
Trim56Q80VI1 Gm13122-201ENSMUST00000118380 453 ntBASIC5.03□□□□□ -1.6
Trim56Q80VI1 Gm11429-201ENSMUST00000119089 144 ntBASIC5.03□□□□□ -1.6
Trim56Q80VI1 Gm12118-201ENSMUST00000119766 532 ntBASIC5.03□□□□□ -1.6
Trim56Q80VI1 Gm8880-201ENSMUST00000121800 454 ntBASIC5.03□□□□□ -1.6
Trim56Q80VI1 Gm16353-201ENSMUST00000159458 1223 ntBASIC5.03□□□□□ -1.6
Trim56Q80VI1 Gm1992-201ENSMUST00000161581 250 ntTSL 3 BASIC5.03□□□□□ -1.6
Trim56Q80VI1 Lce6a-202ENSMUST00000170676 485 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
Trim56Q80VI1 Mir6414-201ENSMUST00000183685 82 ntBASIC5.03□□□□□ -1.6
Trim56Q80VI1 Mir7074-201ENSMUST00000183884 63 ntBASIC5.03□□□□□ -1.6
Trim56Q80VI1 Gm5368-201ENSMUST00000189012 589 ntBASIC5.03□□□□□ -1.6
Trim56Q80VI1 Gm28724-202ENSMUST00000194218 295 ntBASIC5.03□□□□□ -1.6
Trim56Q80VI1 Zfp813-ps-202ENSMUST00000204773 618 ntTSL 5 BASIC5.03□□□□□ -1.6
Trim56Q80VI1 Nat1-202ENSMUST00000212171 1208 ntAPPRIS ALT1 TSL 5 BASIC5.03□□□□□ -1.6
Trim56Q80VI1 2610044O15Rik8-201ENSMUST00000079272 264 ntTSL 5 BASIC5.03□□□□□ -1.6
Trim56Q80VI1 Gm37814-201ENSMUST00000195820 3644 ntBASIC5.03□□□□□ -1.6
Trim56Q80VI1 Gm11639-203ENSMUST00000212287 17665 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
Trim56Q80VI1 Nlrp4e-201ENSMUST00000076470 3382 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
Trim56Q80VI1 Gm5362-201ENSMUST00000211968 3085 ntBASIC5.03□□□□□ -1.6
Trim56Q80VI1 AC133079.1-201ENSMUST00000220943 1881 ntBASIC5.03□□□□□ -1.6
Trim56Q80VI1 Zfp266-202ENSMUST00000174462 6283 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
Trim56Q80VI1 Naa16-201ENSMUST00000022597 13223 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
Trim56Q80VI1 Zfp981-201ENSMUST00000105735 3038 ntAPPRIS P1 TSL 2 BASIC5.02□□□□□ -1.61
Trim56Q80VI1 Gm44542-201ENSMUST00000208677 4314 ntBASIC5.02□□□□□ -1.61
Trim56Q80VI1 Gm37192-201ENSMUST00000194479 1348 ntBASIC5.02□□□□□ -1.61
Trim56Q80VI1 Neto2-201ENSMUST00000109686 5610 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
Trim56Q80VI1 Gm9921-201ENSMUST00000173293 4399 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
Trim56Q80VI1 Gm25537-201ENSMUST00000103851 109 ntBASIC5.02□□□□□ -1.61
Trim56Q80VI1 Rps13-ps7-201ENSMUST00000122045 368 ntBASIC5.02□□□□□ -1.61
Trim56Q80VI1 Nell1os-202ENSMUST00000136672 491 ntTSL 5 BASIC5.02□□□□□ -1.61
Trim56Q80VI1 Gm25908-201ENSMUST00000157624 98 ntBASIC5.02□□□□□ -1.61
Trim56Q80VI1 Gm23262-201ENSMUST00000158323 168 ntBASIC5.02□□□□□ -1.61
Retrieved 100 of 76,532 protein–RNA pairs in 136.1 ms