Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Nup88Q8CEC0 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Nup88Q8CEC0 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Nup88Q8CEC0 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Nup88Q8CEC0 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Nup88Q8CEC0 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Nup88Q8CEC0 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Nup88Q8CEC0 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Nup88Q8CEC0 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Nup88Q8CEC0 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Nup88Q8CEC0 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Nup88Q8CEC0 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Nup88Q8CEC0 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Nup88Q8CEC0 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Nup88Q8CEC0 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Nup88Q8CEC0 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Nup88Q8CEC0 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC20.31■□□□□ 0.84
Nup88Q8CEC0 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Nup88Q8CEC0 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Nup88Q8CEC0 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Nup88Q8CEC0 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC20.31■□□□□ 0.84
Nup88Q8CEC0 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Nup88Q8CEC0 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Nup88Q8CEC0 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Nup88Q8CEC0 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
Nup88Q8CEC0 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Nup88Q8CEC0 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Nup88Q8CEC0 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nup88Q8CEC0 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nup88Q8CEC0 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nup88Q8CEC0 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nup88Q8CEC0 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Nup88Q8CEC0 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nup88Q8CEC0 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nup88Q8CEC0 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nup88Q8CEC0 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Nup88Q8CEC0 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nup88Q8CEC0 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Nup88Q8CEC0 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
Nup88Q8CEC0 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nup88Q8CEC0 Gm9987-201ENSMUST00000069768 567 ntBASIC20.3■□□□□ 0.84
Nup88Q8CEC0 Gm45560-201ENSMUST00000211492 1472 ntBASIC20.3■□□□□ 0.84
Nup88Q8CEC0 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nup88Q8CEC0 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nup88Q8CEC0 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nup88Q8CEC0 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
Nup88Q8CEC0 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nup88Q8CEC0 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nup88Q8CEC0 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
Nup88Q8CEC0 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Nup88Q8CEC0 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nup88Q8CEC0 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nup88Q8CEC0 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nup88Q8CEC0 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
Nup88Q8CEC0 Gm5417-201ENSMUST00000079706 384 ntBASIC20.29■□□□□ 0.84
Nup88Q8CEC0 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nup88Q8CEC0 AC124581.1-201ENSMUST00000225416 1399 ntBASIC20.29■□□□□ 0.84
Nup88Q8CEC0 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Nup88Q8CEC0 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC20.29■□□□□ 0.84
Nup88Q8CEC0 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC20.29■□□□□ 0.84
Nup88Q8CEC0 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nup88Q8CEC0 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nup88Q8CEC0 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nup88Q8CEC0 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nup88Q8CEC0 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nup88Q8CEC0 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nup88Q8CEC0 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Nup88Q8CEC0 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Nup88Q8CEC0 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nup88Q8CEC0 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nup88Q8CEC0 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nup88Q8CEC0 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nup88Q8CEC0 Gm6433-201ENSMUST00000118634 875 ntBASIC20.28■□□□□ 0.84
Nup88Q8CEC0 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC20.28■□□□□ 0.84
Nup88Q8CEC0 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nup88Q8CEC0 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nup88Q8CEC0 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nup88Q8CEC0 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nup88Q8CEC0 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nup88Q8CEC0 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nup88Q8CEC0 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nup88Q8CEC0 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nup88Q8CEC0 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nup88Q8CEC0 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nup88Q8CEC0 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nup88Q8CEC0 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Nup88Q8CEC0 AC153881.2-201ENSMUST00000214877 204 ntBASIC20.27■□□□□ 0.84
Nup88Q8CEC0 AC121577.1-201ENSMUST00000227302 707 ntBASIC20.27■□□□□ 0.84
Nup88Q8CEC0 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nup88Q8CEC0 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nup88Q8CEC0 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nup88Q8CEC0 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nup88Q8CEC0 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Nup88Q8CEC0 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nup88Q8CEC0 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nup88Q8CEC0 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nup88Q8CEC0 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Nup88Q8CEC0 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nup88Q8CEC0 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nup88Q8CEC0 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 45.2 ms