Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col11a1Q61245 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col11a1Q61245 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col11a1Q61245 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col11a1Q61245 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col11a1Q61245 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col11a1Q61245 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC19.3■□□□□ 0.68
Col11a1Q61245 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Col11a1Q61245 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col11a1Q61245 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
Col11a1Q61245 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Col11a1Q61245 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col11a1Q61245 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC19.3■□□□□ 0.68
Col11a1Q61245 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col11a1Q61245 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Col11a1Q61245 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Col11a1Q61245 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col11a1Q61245 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC19.3■□□□□ 0.68
Col11a1Q61245 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC19.3■□□□□ 0.68
Col11a1Q61245 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Col11a1Q61245 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col11a1Q61245 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Col11a1Q61245 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col11a1Q61245 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col11a1Q61245 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Col11a1Q61245 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col11a1Q61245 Wnt10b-204ENSMUST00000226655 1807 ntBASIC19.29■□□□□ 0.68
Col11a1Q61245 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col11a1Q61245 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col11a1Q61245 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col11a1Q61245 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC19.29■□□□□ 0.68
Col11a1Q61245 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Col11a1Q61245 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC19.29■□□□□ 0.68
Col11a1Q61245 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC19.29■□□□□ 0.68
Col11a1Q61245 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC19.29■□□□□ 0.68
Col11a1Q61245 Gm43332-201ENSMUST00000202511 1044 ntBASIC19.29■□□□□ 0.68
Col11a1Q61245 AC154621.1-201ENSMUST00000226155 1119 ntBASIC19.29■□□□□ 0.68
Col11a1Q61245 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col11a1Q61245 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Col11a1Q61245 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col11a1Q61245 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col11a1Q61245 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col11a1Q61245 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col11a1Q61245 Gm7862-201ENSMUST00000121461 292 ntBASIC19.28■□□□□ 0.68
Col11a1Q61245 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col11a1Q61245 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col11a1Q61245 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC19.28■□□□□ 0.68
Col11a1Q61245 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC19.28■□□□□ 0.68
Col11a1Q61245 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col11a1Q61245 Fst-202ENSMUST00000223640 2612 ntBASIC19.28■□□□□ 0.68
Col11a1Q61245 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col11a1Q61245 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col11a1Q61245 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col11a1Q61245 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col11a1Q61245 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col11a1Q61245 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC19.28■□□□□ 0.68
Col11a1Q61245 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col11a1Q61245 Gm35558-201ENSMUST00000222675 2219 ntBASIC19.28■□□□□ 0.68
Col11a1Q61245 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col11a1Q61245 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Col11a1Q61245 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col11a1Q61245 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col11a1Q61245 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col11a1Q61245 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col11a1Q61245 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col11a1Q61245 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col11a1Q61245 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC19.27■□□□□ 0.68
Col11a1Q61245 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
Col11a1Q61245 Gm43575-201ENSMUST00000196420 516 ntBASIC19.27■□□□□ 0.68
Col11a1Q61245 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col11a1Q61245 AC160338.1-201ENSMUST00000214232 705 ntBASIC19.27■□□□□ 0.68
Col11a1Q61245 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col11a1Q61245 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Col11a1Q61245 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Col11a1Q61245 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Col11a1Q61245 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
Col11a1Q61245 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Col11a1Q61245 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Col11a1Q61245 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col11a1Q61245 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col11a1Q61245 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Col11a1Q61245 Gm42670-201ENSMUST00000201816 1292 ntBASIC19.26■□□□□ 0.67
Col11a1Q61245 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col11a1Q61245 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col11a1Q61245 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC19.26■□□□□ 0.67
Col11a1Q61245 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC19.26■□□□□ 0.67
Col11a1Q61245 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col11a1Q61245 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col11a1Q61245 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col11a1Q61245 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col11a1Q61245 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col11a1Q61245 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Col11a1Q61245 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col11a1Q61245 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col11a1Q61245 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col11a1Q61245 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Col11a1Q61245 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col11a1Q61245 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col11a1Q61245 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC19.25■□□□□ 0.67
Col11a1Q61245 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms