Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Upf3aQ3ULJ3 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Upf3aQ3ULJ3 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Upf3aQ3ULJ3 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Upf3aQ3ULJ3 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
Upf3aQ3ULJ3 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Upf3aQ3ULJ3 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Upf3aQ3ULJ3 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Upf3aQ3ULJ3 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Upf3aQ3ULJ3 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Upf3aQ3ULJ3 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Upf3aQ3ULJ3 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC18.1■□□□□ 0.49
Upf3aQ3ULJ3 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Upf3aQ3ULJ3 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Upf3aQ3ULJ3 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Upf3aQ3ULJ3 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Upf3aQ3ULJ3 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Upf3aQ3ULJ3 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC18.09■□□□□ 0.49
Upf3aQ3ULJ3 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Upf3aQ3ULJ3 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Upf3aQ3ULJ3 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Upf3aQ3ULJ3 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC18.09■□□□□ 0.49
Upf3aQ3ULJ3 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC18.09■□□□□ 0.49
Upf3aQ3ULJ3 Gm18115-201ENSMUST00000221209 621 ntBASIC18.09■□□□□ 0.49
Upf3aQ3ULJ3 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Upf3aQ3ULJ3 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Upf3aQ3ULJ3 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Upf3aQ3ULJ3 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Upf3aQ3ULJ3 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Upf3aQ3ULJ3 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Upf3aQ3ULJ3 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Upf3aQ3ULJ3 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Upf3aQ3ULJ3 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Upf3aQ3ULJ3 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Upf3aQ3ULJ3 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Upf3aQ3ULJ3 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC18.09■□□□□ 0.49
Upf3aQ3ULJ3 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Upf3aQ3ULJ3 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Upf3aQ3ULJ3 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC18.09■□□□□ 0.49
Upf3aQ3ULJ3 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Upf3aQ3ULJ3 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Upf3aQ3ULJ3 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
Upf3aQ3ULJ3 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
Upf3aQ3ULJ3 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
Upf3aQ3ULJ3 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Upf3aQ3ULJ3 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
Upf3aQ3ULJ3 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Upf3aQ3ULJ3 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
Upf3aQ3ULJ3 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Upf3aQ3ULJ3 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Upf3aQ3ULJ3 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Upf3aQ3ULJ3 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Upf3aQ3ULJ3 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Upf3aQ3ULJ3 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Upf3aQ3ULJ3 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Upf3aQ3ULJ3 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Upf3aQ3ULJ3 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Upf3aQ3ULJ3 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Upf3aQ3ULJ3 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Upf3aQ3ULJ3 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Upf3aQ3ULJ3 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC18.07■□□□□ 0.48
Upf3aQ3ULJ3 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Upf3aQ3ULJ3 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Upf3aQ3ULJ3 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Upf3aQ3ULJ3 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Upf3aQ3ULJ3 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Upf3aQ3ULJ3 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Upf3aQ3ULJ3 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Upf3aQ3ULJ3 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Upf3aQ3ULJ3 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Upf3aQ3ULJ3 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC18.06■□□□□ 0.48
Upf3aQ3ULJ3 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Upf3aQ3ULJ3 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Upf3aQ3ULJ3 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Upf3aQ3ULJ3 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Upf3aQ3ULJ3 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC18.06■□□□□ 0.48
Upf3aQ3ULJ3 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Upf3aQ3ULJ3 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Upf3aQ3ULJ3 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
Upf3aQ3ULJ3 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Upf3aQ3ULJ3 Gm15794-201ENSMUST00000120182 631 ntBASIC18.06■□□□□ 0.48
Upf3aQ3ULJ3 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC18.06■□□□□ 0.48
Upf3aQ3ULJ3 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Upf3aQ3ULJ3 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Upf3aQ3ULJ3 AC133598.3-202ENSMUST00000224219 531 ntBASIC18.06■□□□□ 0.48
Upf3aQ3ULJ3 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Upf3aQ3ULJ3 Spr-ps1-201ENSMUST00000089584 605 ntBASIC18.06■□□□□ 0.48
Upf3aQ3ULJ3 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Upf3aQ3ULJ3 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Upf3aQ3ULJ3 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Upf3aQ3ULJ3 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Upf3aQ3ULJ3 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Upf3aQ3ULJ3 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Upf3aQ3ULJ3 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Upf3aQ3ULJ3 Gm24589-201ENSMUST00000116692 94 ntBASIC18.05■□□□□ 0.48
Upf3aQ3ULJ3 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
Upf3aQ3ULJ3 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC18.05■□□□□ 0.48
Upf3aQ3ULJ3 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC18.05■□□□□ 0.48
Upf3aQ3ULJ3 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Upf3aQ3ULJ3 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms