Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col8a1Q00780 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col8a1Q00780 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col8a1Q00780 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col8a1Q00780 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col8a1Q00780 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Col8a1Q00780 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC14.64□□□□□ -0.07
Col8a1Q00780 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC14.64□□□□□ -0.07
Col8a1Q00780 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col8a1Q00780 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col8a1Q00780 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col8a1Q00780 Gm18206-201ENSMUST00000207027 926 ntBASIC14.64□□□□□ -0.07
Col8a1Q00780 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC14.64□□□□□ -0.07
Col8a1Q00780 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col8a1Q00780 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col8a1Q00780 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col8a1Q00780 Gm43231-201ENSMUST00000202960 2258 ntBASIC14.64□□□□□ -0.07
Col8a1Q00780 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col8a1Q00780 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col8a1Q00780 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col8a1Q00780 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col8a1Q00780 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col8a1Q00780 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col8a1Q00780 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC14.63□□□□□ -0.07
Col8a1Q00780 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col8a1Q00780 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col8a1Q00780 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col8a1Q00780 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col8a1Q00780 Gm37722-201ENSMUST00000193757 208 ntBASIC14.63□□□□□ -0.07
Col8a1Q00780 Gm5712-201ENSMUST00000199748 1043 ntBASIC14.63□□□□□ -0.07
Col8a1Q00780 Gm45328-201ENSMUST00000210942 917 ntBASIC14.63□□□□□ -0.07
Col8a1Q00780 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col8a1Q00780 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Col8a1Q00780 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col8a1Q00780 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col8a1Q00780 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col8a1Q00780 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col8a1Q00780 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC14.62□□□□□ -0.07
Col8a1Q00780 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col8a1Q00780 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Col8a1Q00780 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC14.62□□□□□ -0.07
Col8a1Q00780 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col8a1Q00780 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col8a1Q00780 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col8a1Q00780 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col8a1Q00780 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC14.62□□□□□ -0.07
Col8a1Q00780 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col8a1Q00780 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col8a1Q00780 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col8a1Q00780 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC14.62□□□□□ -0.07
Col8a1Q00780 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col8a1Q00780 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col8a1Q00780 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col8a1Q00780 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col8a1Q00780 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col8a1Q00780 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Col8a1Q00780 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Col8a1Q00780 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC14.61□□□□□ -0.07
Col8a1Q00780 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC14.61□□□□□ -0.07
Col8a1Q00780 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col8a1Q00780 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col8a1Q00780 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
Col8a1Q00780 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col8a1Q00780 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
Col8a1Q00780 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col8a1Q00780 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Col8a1Q00780 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col8a1Q00780 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC14.61□□□□□ -0.07
Col8a1Q00780 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col8a1Q00780 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col8a1Q00780 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col8a1Q00780 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col8a1Q00780 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col8a1Q00780 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Col8a1Q00780 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col8a1Q00780 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col8a1Q00780 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col8a1Q00780 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col8a1Q00780 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Col8a1Q00780 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col8a1Q00780 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col8a1Q00780 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC14.6□□□□□ -0.07
Col8a1Q00780 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC14.6□□□□□ -0.07
Col8a1Q00780 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Col8a1Q00780 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC14.6□□□□□ -0.07
Col8a1Q00780 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col8a1Q00780 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Col8a1Q00780 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col8a1Q00780 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Col8a1Q00780 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC14.6□□□□□ -0.07
Col8a1Q00780 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col8a1Q00780 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col8a1Q00780 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col8a1Q00780 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col8a1Q00780 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC14.6□□□□□ -0.07
Col8a1Q00780 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col8a1Q00780 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col8a1Q00780 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col8a1Q00780 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col8a1Q00780 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms