Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Gm20049-201ENSMUST00000219950 730 ntBASIC18.93■□□□□ 0.62
Hmgb1P63158 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Hmgb1P63158 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Hmgb1P63158 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Hmgb1P63158 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Hmgb1P63158 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Hmgb1P63158 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Hmgb1P63158 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Hmgb1P63158 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Hmgb1P63158 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb1P63158 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb1P63158 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Hmgb1P63158 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb1P63158 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb1P63158 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb1P63158 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb1P63158 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb1P63158 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb1P63158 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb1P63158 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
Hmgb1P63158 Gm18666-201ENSMUST00000190039 958 ntBASIC18.92■□□□□ 0.62
Hmgb1P63158 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb1P63158 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb1P63158 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb1P63158 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Hmgb1P63158 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb1P63158 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb1P63158 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb1P63158 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb1P63158 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb1P63158 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb1P63158 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb1P63158 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb1P63158 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb1P63158 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb1P63158 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb1P63158 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb1P63158 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb1P63158 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb1P63158 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb1P63158 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb1P63158 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb1P63158 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb1P63158 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC18.91■□□□□ 0.62
Hmgb1P63158 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb1P63158 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC18.91■□□□□ 0.62
Hmgb1P63158 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb1P63158 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC18.91■□□□□ 0.62
Hmgb1P63158 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb1P63158 Gm27275-201ENSMUST00000184318 272 ntBASIC18.91■□□□□ 0.62
Hmgb1P63158 Gm42545-201ENSMUST00000202755 922 ntBASIC18.91■□□□□ 0.62
Hmgb1P63158 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb1P63158 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb1P63158 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb1P63158 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb1P63158 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb1P63158 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb1P63158 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb1P63158 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Hmgb1P63158 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Hmgb1P63158 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Hmgb1P63158 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC18.9■□□□□ 0.62
Hmgb1P63158 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
Hmgb1P63158 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Hmgb1P63158 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Hmgb1P63158 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Hmgb1P63158 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Hmgb1P63158 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Hmgb1P63158 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Hmgb1P63158 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Hmgb1P63158 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Hmgb1P63158 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
Hmgb1P63158 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Hmgb1P63158 Cxcl14-202ENSMUST00000224801 1467 ntBASIC18.9■□□□□ 0.62
Hmgb1P63158 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Hmgb1P63158 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Hmgb1P63158 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Hmgb1P63158 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Hmgb1P63158 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Hmgb1P63158 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Hmgb1P63158 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
Hmgb1P63158 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Hmgb1P63158 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Hmgb1P63158 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Hmgb1P63158 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Hmgb1P63158 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Hmgb1P63158 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Hmgb1P63158 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC18.88■□□□□ 0.61
Hmgb1P63158 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Hmgb1P63158 Gm16499-203ENSMUST00000204633 2177 ntBASIC18.88■□□□□ 0.61
Hmgb1P63158 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Hmgb1P63158 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Hmgb1P63158 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC18.88■□□□□ 0.61
Hmgb1P63158 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Hmgb1P63158 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Hmgb1P63158 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC18.88■□□□□ 0.61
Hmgb1P63158 Gm4974-201ENSMUST00000209974 875 ntBASIC18.88■□□□□ 0.61
Hmgb1P63158 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
Hmgb1P63158 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
Hmgb1P63158 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms