Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RaraP11416 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC18.62■□□□□ 0.57
RaraP11416 Gm18025-201ENSMUST00000221733 862 ntBASIC18.62■□□□□ 0.57
RaraP11416 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RaraP11416 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RaraP11416 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RaraP11416 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC18.62■□□□□ 0.57
RaraP11416 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RaraP11416 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RaraP11416 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RaraP11416 Haglr-201ENSMUST00000100000 2085 ntBASIC18.62■□□□□ 0.57
RaraP11416 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC18.62■□□□□ 0.57
RaraP11416 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RaraP11416 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RaraP11416 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
RaraP11416 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RaraP11416 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RaraP11416 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RaraP11416 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RaraP11416 Gm26596-201ENSMUST00000180464 2655 ntBASIC18.61■□□□□ 0.57
RaraP11416 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
RaraP11416 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RaraP11416 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RaraP11416 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RaraP11416 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RaraP11416 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RaraP11416 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RaraP11416 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RaraP11416 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RaraP11416 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RaraP11416 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RaraP11416 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
RaraP11416 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RaraP11416 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
RaraP11416 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RaraP11416 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RaraP11416 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
RaraP11416 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC18.6■□□□□ 0.57
RaraP11416 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RaraP11416 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
RaraP11416 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RaraP11416 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RaraP11416 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
RaraP11416 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
RaraP11416 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RaraP11416 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RaraP11416 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RaraP11416 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC18.6■□□□□ 0.57
RaraP11416 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RaraP11416 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RaraP11416 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
RaraP11416 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RaraP11416 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RaraP11416 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
RaraP11416 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
RaraP11416 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RaraP11416 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RaraP11416 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
RaraP11416 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC18.59■□□□□ 0.57
RaraP11416 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC18.59■□□□□ 0.57
RaraP11416 Slc35b2-207ENSMUST00000226086 850 ntBASIC18.59■□□□□ 0.57
RaraP11416 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RaraP11416 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
RaraP11416 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RaraP11416 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RaraP11416 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RaraP11416 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RaraP11416 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC18.59■□□□□ 0.57
RaraP11416 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
RaraP11416 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
RaraP11416 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
RaraP11416 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
RaraP11416 Gm45412-201ENSMUST00000210217 2275 ntBASIC18.58■□□□□ 0.57
RaraP11416 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
RaraP11416 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
RaraP11416 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
RaraP11416 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
RaraP11416 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
RaraP11416 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RaraP11416 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC18.58■□□□□ 0.56
RaraP11416 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
RaraP11416 Gm37292-201ENSMUST00000192062 758 ntBASIC18.58■□□□□ 0.56
RaraP11416 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC18.58■□□□□ 0.56
RaraP11416 Gm20049-201ENSMUST00000219950 730 ntBASIC18.58■□□□□ 0.56
RaraP11416 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
RaraP11416 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
RaraP11416 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RaraP11416 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RaraP11416 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RaraP11416 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RaraP11416 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RaraP11416 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
RaraP11416 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RaraP11416 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RaraP11416 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC18.57■□□□□ 0.56
RaraP11416 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC18.57■□□□□ 0.56
RaraP11416 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC18.57■□□□□ 0.56
RaraP11416 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
RaraP11416 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RaraP11416 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms