Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Cops4O88544 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC15.92■□□□□ 0.14
Cops4O88544 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Cops4O88544 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
Cops4O88544 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC15.92■□□□□ 0.14
Cops4O88544 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Cops4O88544 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC15.92■□□□□ 0.14
Cops4O88544 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
Cops4O88544 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
Cops4O88544 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Cops4O88544 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Cops4O88544 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Cops4O88544 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
Cops4O88544 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Cops4O88544 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
Cops4O88544 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
Cops4O88544 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Cops4O88544 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Cops4O88544 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Cops4O88544 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Cops4O88544 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Cops4O88544 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
Cops4O88544 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Cops4O88544 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Cops4O88544 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
Cops4O88544 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC15.91■□□□□ 0.14
Cops4O88544 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC15.91■□□□□ 0.14
Cops4O88544 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC15.91■□□□□ 0.14
Cops4O88544 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC15.91■□□□□ 0.14
Cops4O88544 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC15.91■□□□□ 0.14
Cops4O88544 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Cops4O88544 AC125311.2-201ENSMUST00000227477 1940 ntBASIC15.91■□□□□ 0.14
Cops4O88544 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
Cops4O88544 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Cops4O88544 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Cops4O88544 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
Cops4O88544 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cops4O88544 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
Cops4O88544 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cops4O88544 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cops4O88544 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Cops4O88544 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
Cops4O88544 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cops4O88544 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cops4O88544 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cops4O88544 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC15.9■□□□□ 0.14
Cops4O88544 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Cops4O88544 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
Cops4O88544 AV356131-201ENSMUST00000206201 750 ntBASIC15.9■□□□□ 0.14
Cops4O88544 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Cops4O88544 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cops4O88544 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cops4O88544 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
Cops4O88544 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC15.9■□□□□ 0.14
Cops4O88544 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cops4O88544 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cops4O88544 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cops4O88544 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Cops4O88544 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cops4O88544 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cops4O88544 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Cops4O88544 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cops4O88544 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.14
Cops4O88544 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Cops4O88544 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Cops4O88544 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Cops4O88544 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Cops4O88544 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Cops4O88544 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Cops4O88544 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC15.89■□□□□ 0.13
Cops4O88544 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC15.89■□□□□ 0.13
Cops4O88544 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC15.89■□□□□ 0.13
Cops4O88544 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
Cops4O88544 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Cops4O88544 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Cops4O88544 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Cops4O88544 Gm11841-201ENSMUST00000117060 1963 ntBASIC15.89■□□□□ 0.13
Cops4O88544 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
Cops4O88544 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Cops4O88544 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Cops4O88544 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Cops4O88544 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC15.89■□□□□ 0.13
Cops4O88544 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC15.88■□□□□ 0.13
Cops4O88544 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Cops4O88544 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
Cops4O88544 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
Cops4O88544 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Cops4O88544 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Cops4O88544 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
Cops4O88544 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Cops4O88544 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
Cops4O88544 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Cops4O88544 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC15.88■□□□□ 0.13
Cops4O88544 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Cops4O88544 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
Cops4O88544 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Cops4O88544 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Cops4O88544 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Cops4O88544 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Cops4O88544 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms