Protein–RNA interactions for Protein: Q08423

Tff1, Trefoil factor 1, mousemouse

Predictions only

Length 87 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tff1Q08423 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC19.69■□□□□ 0.74
Tff1Q08423 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Tff1Q08423 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Tff1Q08423 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Tff1Q08423 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Tff1Q08423 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Tff1Q08423 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Tff1Q08423 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC19.66■□□□□ 0.74
Tff1Q08423 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC19.66■□□□□ 0.74
Tff1Q08423 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Tff1Q08423 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC19.65■□□□□ 0.74
Tff1Q08423 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Tff1Q08423 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Tff1Q08423 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Tff1Q08423 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Tff1Q08423 Pcf11-205ENSMUST00000208255 1720 ntBASIC19.63■□□□□ 0.73
Tff1Q08423 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Tff1Q08423 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Tff1Q08423 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Tff1Q08423 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Tff1Q08423 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Tff1Q08423 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC19.62■□□□□ 0.73
Tff1Q08423 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Tff1Q08423 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Tff1Q08423 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Tff1Q08423 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Tff1Q08423 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Tff1Q08423 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Tff1Q08423 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Tff1Q08423 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC19.59■□□□□ 0.73
Tff1Q08423 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Tff1Q08423 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC19.58■□□□□ 0.73
Tff1Q08423 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Tff1Q08423 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC19.58■□□□□ 0.72
Tff1Q08423 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
Tff1Q08423 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Tff1Q08423 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC19.57■□□□□ 0.72
Tff1Q08423 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC19.57■□□□□ 0.72
Tff1Q08423 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
Tff1Q08423 Gm24970-201ENSMUST00000175582 82 ntBASIC19.57■□□□□ 0.72
Tff1Q08423 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC19.57■□□□□ 0.72
Tff1Q08423 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Tff1Q08423 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC19.57■□□□□ 0.72
Tff1Q08423 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Tff1Q08423 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Tff1Q08423 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Tff1Q08423 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Tff1Q08423 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
Tff1Q08423 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC19.56■□□□□ 0.72
Tff1Q08423 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Tff1Q08423 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Tff1Q08423 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Tff1Q08423 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Tff1Q08423 Gm9939-201ENSMUST00000067161 1154 ntBASIC19.54■□□□□ 0.72
Tff1Q08423 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Tff1Q08423 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Tff1Q08423 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Tff1Q08423 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Tff1Q08423 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Tff1Q08423 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Tff1Q08423 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Tff1Q08423 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Tff1Q08423 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC19.53■□□□□ 0.72
Tff1Q08423 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Tff1Q08423 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Tff1Q08423 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
Tff1Q08423 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Tff1Q08423 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Tff1Q08423 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Tff1Q08423 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Tff1Q08423 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Tff1Q08423 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Tff1Q08423 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
Tff1Q08423 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Tff1Q08423 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC19.47■□□□□ 0.71
Tff1Q08423 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Tff1Q08423 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Tff1Q08423 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Tff1Q08423 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Tff1Q08423 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Tff1Q08423 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Tff1Q08423 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Tff1Q08423 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Tff1Q08423 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC19.44■□□□□ 0.7
Tff1Q08423 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Tff1Q08423 Gm8503-201ENSMUST00000118131 455 ntBASIC19.43■□□□□ 0.7
Tff1Q08423 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC19.43■□□□□ 0.7
Tff1Q08423 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Tff1Q08423 Gm6821-201ENSMUST00000107540 542 ntBASIC19.42■□□□□ 0.7
Tff1Q08423 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Tff1Q08423 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Tff1Q08423 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC19.41■□□□□ 0.7
Tff1Q08423 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Tff1Q08423 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Tff1Q08423 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Tff1Q08423 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Tff1Q08423 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Tff1Q08423 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Tff1Q08423 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Tff1Q08423 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 61.1 ms