Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 AC104958.1-201ENST00000509350 1973 ntTSL 2 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 Z93929.1-201ENST00000418200 1475 ntBASIC6.09□□□□□ -1.43
NKX3-1Q99801 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 CYP4Z2P-202ENST00000505841 1436 ntTSL 2 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 FBLN5-205ENST00000556154 1875 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
NKX3-1Q99801 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
NKX3-1Q99801 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
NKX3-1Q99801 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 ZHX3-205ENST00000432768 3551 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 HBS1L-206ENST00000415177 2636 ntTSL 5 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 SLC26A5-205ENST00000393723 2174 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
NKX3-1Q99801 IFNA14-201ENST00000380222 990 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 RPSAP44-201ENST00000406712 884 ntBASIC6.09□□□□□ -1.43
NKX3-1Q99801 ERMN-202ENST00000409216 746 ntTSL 4 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 GRPEL2P2-201ENST00000421856 670 ntBASIC6.09□□□□□ -1.43
NKX3-1Q99801 AP000431.1-201ENST00000424219 469 ntTSL 3 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 CDK7P1-201ENST00000434574 693 ntBASIC6.09□□□□□ -1.43
NKX3-1Q99801 NQO1-204ENST00000439109 924 ntTSL 2 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 LAMTOR5-AS1-201ENST00000444238 881 ntTSL 5 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 HBG2-204ENST00000444587 307 ntTSL 2 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 AL591379.2-201ENST00000450223 397 ntBASIC6.09□□□□□ -1.43
NKX3-1Q99801 AL034399.1-201ENST00000451535 380 ntBASIC6.09□□□□□ -1.43
NKX3-1Q99801 FOXP1-AS1-201ENST00000465742 700 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
NKX3-1Q99801 RN7SL688P-201ENST00000471754 275 ntBASIC6.09□□□□□ -1.43
NKX3-1Q99801 NSRP1-205ENST00000479218 540 ntTSL 3 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 AC109587.1-201ENST00000482368 962 ntTSL 3 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 AC079944.1-201ENST00000485426 495 ntBASIC6.09□□□□□ -1.43
NKX3-1Q99801 AC095057.1-201ENST00000507583 168 ntBASIC6.09□□□□□ -1.43
NKX3-1Q99801 SUMO2P7-201ENST00000511179 285 ntBASIC6.09□□□□□ -1.43
NKX3-1Q99801 AC087664.2-202ENST00000521274 515 ntTSL 3 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 AC022616.2-201ENST00000523185 300 ntBASIC6.09□□□□□ -1.43
NKX3-1Q99801 AC090539.2-201ENST00000523425 671 ntBASIC6.09□□□□□ -1.43
NKX3-1Q99801 C5orf58-205ENST00000524171 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
NKX3-1Q99801 AC087277.1-201ENST00000529910 535 ntTSL 3 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 OR4A21P-201ENST00000532759 944 ntBASIC6.09□□□□□ -1.43
NKX3-1Q99801 AC078950.1-201ENST00000538349 550 ntTSL 4 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 EGLN3P1-201ENST00000541727 720 ntBASIC6.09□□□□□ -1.43
NKX3-1Q99801 AC011601.1-201ENST00000549710 577 ntTSL 3 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 ATP5G2-205ENST00000549748 728 ntTSL 2 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 PCAT29-202ENST00000558941 545 ntTSL 4 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 INO80-AS1-202ENST00000560178 444 ntTSL 3 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 NDUFA3P4-201ENST00000560814 250 ntBASIC6.09□□□□□ -1.43
NKX3-1Q99801 AC023827.2-201ENST00000566880 1061 ntBASIC6.09□□□□□ -1.43
NKX3-1Q99801 NUDT7-206ENST00000568787 678 ntTSL 2 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 AC011476.3-203ENST00000586961 346 ntTSL 5 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 AC011483.2-201ENST00000594512 536 ntTSL 4 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 AL583859.2-202ENST00000602311 505 ntTSL 5 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 AL139041.1-201ENST00000605480 610 ntBASIC6.09□□□□□ -1.43
NKX3-1Q99801 HOTTIP_2.1-201ENST00000616633 376 ntBASIC6.09□□□□□ -1.43
NKX3-1Q99801 EFCAB8-204ENST00000618684 435 ntTSL 5 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 AC021079.1-201ENST00000625268 907 ntTSL 3 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
NKX3-1Q99801 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 LINC01360-203ENST00000440762 3871 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
NKX3-1Q99801 YES1-203ENST00000577961 4554 ntTSL 5 BASIC6.09□□□□□ -1.44
NKX3-1Q99801 DTNA-226ENST00000596745 1508 ntTSL 2 BASIC6.09□□□□□ -1.44
NKX3-1Q99801 EIF4ENIF1-205ENST00000397523 3420 ntTSL 5 BASIC6.09□□□□□ -1.44
NKX3-1Q99801 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC6.09□□□□□ -1.44
NKX3-1Q99801 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
NKX3-1Q99801 DMD-228ENST00000541735 7080 ntTSL 5 BASIC6.09□□□□□ -1.44
NKX3-1Q99801 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC6.09□□□□□ -1.44
NKX3-1Q99801 AC121761.1-201ENST00000547326 1482 ntTSL 3 BASIC6.09□□□□□ -1.44
NKX3-1Q99801 SYT14P1-202ENST00000600441 1448 ntBASIC6.08□□□□□ -1.44
NKX3-1Q99801 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 CLEC5A-206ENST00000546910 3511 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
NKX3-1Q99801 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 CLCA3P-203ENST00000490028 2781 ntBASIC6.08□□□□□ -1.44
NKX3-1Q99801 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 BANF2-201ENST00000246090 595 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
NKX3-1Q99801 PSORS1C1-201ENST00000259881 908 ntAPPRIS P2 TSL 1 (best) BASIC6.08□□□□□ -1.44
NKX3-1Q99801 C5orf63-201ENST00000296662 966 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 HNRNPCL4-201ENST00000323770 882 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 AC006547.2-201ENST00000412713 526 ntTSL 4 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 VN1R66P-201ENST00000412929 916 ntBASIC6.08□□□□□ -1.44
NKX3-1Q99801 AC009237.9-201ENST00000414800 347 ntBASIC6.08□□□□□ -1.44
NKX3-1Q99801 AL031005.1-201ENST00000416959 723 ntTSL 3 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 AC096570.1-201ENST00000419013 569 ntTSL 4 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 LIX1L-AS1-203ENST00000421764 287 ntTSL 2 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 PSMC1P2-201ENST00000423961 1204 ntBASIC6.08□□□□□ -1.44
NKX3-1Q99801 CBWD5-209ENST00000430059 1242 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
NKX3-1Q99801 AL450384.2-202ENST00000436485 656 ntTSL 3 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 LINC00570-203ENST00000437795 490 ntTSL 3 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 AL031316.1-202ENST00000441672 449 ntTSL 3 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 AL353803.3-201ENST00000444641 335 ntBASIC6.08□□□□□ -1.44
NKX3-1Q99801 CYCSP44-201ENST00000448560 313 ntBASIC6.08□□□□□ -1.44
NKX3-1Q99801 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 RN7SL516P-201ENST00000496127 297 ntBASIC6.08□□□□□ -1.44
NKX3-1Q99801 OR7E158P-201ENST00000524483 910 ntBASIC6.08□□□□□ -1.44
NKX3-1Q99801 AC009656.1-201ENST00000531966 478 ntTSL 3 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 AL157871.5-201ENST00000555212 533 ntTSL 2 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 LINC01582-201ENST00000560195 560 ntTSL 4 BASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 83.8 ms