Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm37862-201ENSMUST00000193079 2533 ntBASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm13340-201ENSMUST00000117219 1545 ntBASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Acsm3-202ENSMUST00000106526 2704 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Igkv14-100-201ENSMUST00000103325 350 ntAPPRIS ALT2 BASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm23431-201ENSMUST00000104006 107 ntBASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm26156-201ENSMUST00000116999 123 ntBASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm15988-201ENSMUST00000118677 367 ntBASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm15377-201ENSMUST00000119594 246 ntBASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm12515-201ENSMUST00000120116 361 ntBASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm15014-201ENSMUST00000120742 258 ntBASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm15263-201ENSMUST00000121556 642 ntBASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm28039-201ENSMUST00000149128 254 ntTSL 3 BASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm11640-201ENSMUST00000155987 272 ntTSL 3 BASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm25965-201ENSMUST00000157170 93 ntBASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm24224-201ENSMUST00000158828 258 ntBASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm22646-201ENSMUST00000175130 115 ntBASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm25999-201ENSMUST00000175398 133 ntBASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm25748-201ENSMUST00000175487 70 ntBASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm21828-201ENSMUST00000178050 543 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm23619-201ENSMUST00000178411 94 ntBASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm21866-201ENSMUST00000178428 543 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm21725-201ENSMUST00000178519 543 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm21800-201ENSMUST00000178559 543 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm25474-201ENSMUST00000179052 94 ntBASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm21852-201ENSMUST00000179125 543 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm22047-201ENSMUST00000179176 94 ntBASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm21764-201ENSMUST00000179219 543 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm21891-201ENSMUST00000179284 543 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm21904-201ENSMUST00000179522 543 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm37495-201ENSMUST00000194590 264 ntBASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm43559-201ENSMUST00000198755 466 ntBASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm18903-201ENSMUST00000215343 480 ntBASIC3.86□□□□□ -1.79
Col28a1Q2UY11 AC155634.2-201ENSMUST00000222001 489 ntTSL 3 BASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Olfr1112-201ENSMUST00000053050 957 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm5548-201ENSMUST00000055878 397 ntBASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm9845-201ENSMUST00000056409 598 ntBASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Olfr1049-201ENSMUST00000099899 953 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm37903-201ENSMUST00000192122 2381 ntBASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm38278-201ENSMUST00000194715 1365 ntBASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Fam46d-204ENSMUST00000167154 3004 ntAPPRIS P1 TSL 3 BASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Phf11c-201ENSMUST00000166912 3459 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
Col28a1Q2UY11 Gm15261-201ENSMUST00000136779 2763 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Trim30b-205ENSMUST00000171830 2771 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
Col28a1Q2UY11 AC154677.1-201ENSMUST00000227636 2805 ntBASIC3.85□□□□□ -1.79
Col28a1Q2UY11 P2ry10-201ENSMUST00000053375 2888 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Gm38265-201ENSMUST00000193479 3766 ntBASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Gm44625-201ENSMUST00000207838 1561 ntBASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Zfp458-201ENSMUST00000045969 3488 ntAPPRIS P2 TSL 1 (best) BASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Gm10484-201ENSMUST00000196372 4759 ntBASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Ssx9-201ENSMUST00000103001 602 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Igkv4-69-201ENSMUST00000103349 348 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Traj12-201ENSMUST00000103729 58 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Gm26387-201ENSMUST00000104238 132 ntBASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Gm24318-201ENSMUST00000104490 131 ntBASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Gm11890-201ENSMUST00000119585 417 ntBASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Gm8244-201ENSMUST00000121254 264 ntBASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Gm11321-201ENSMUST00000121257 902 ntBASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Gm13618-201ENSMUST00000128859 384 ntTSL 5 BASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Gm12065-201ENSMUST00000149592 656 ntTSL 3 BASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Gm26320-201ENSMUST00000157742 306 ntBASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Gm23760-201ENSMUST00000158350 116 ntBASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Fam107b-206ENSMUST00000176254 300 ntTSL 5 BASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Gm5709-201ENSMUST00000177879 1165 ntBASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Gm24897-201ENSMUST00000179033 107 ntBASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Gm25284-201ENSMUST00000180345 141 ntBASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Mir7658-201ENSMUST00000184043 57 ntBASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Mir6715-201ENSMUST00000184990 57 ntBASIC3.85□□□□□ -1.79
Col28a1Q2UY11 AV026068-203ENSMUST00000185946 668 ntTSL 3 BASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Gm8790-201ENSMUST00000194108 322 ntBASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Gm44354-201ENSMUST00000196017 143 ntBASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Gm43651-201ENSMUST00000199796 439 ntBASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Gm45868-201ENSMUST00000210247 473 ntTSL 3 BASIC3.85□□□□□ -1.79
Col28a1Q2UY11 AC154296.2-201ENSMUST00000214696 545 ntBASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Gm20304-201ENSMUST00000218168 444 ntBASIC3.85□□□□□ -1.79
Col28a1Q2UY11 AC158641.1-201ENSMUST00000218933 229 ntBASIC3.85□□□□□ -1.79
Col28a1Q2UY11 4930563J15Rik-203ENSMUST00000219796 574 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
Col28a1Q2UY11 AC167140.1-201ENSMUST00000224710 403 ntBASIC3.85□□□□□ -1.79
Col28a1Q2UY11 AC154738.5-201ENSMUST00000227397 310 ntBASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Spag11b-201ENSMUST00000039075 342 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Gm24460-201ENSMUST00000082731 106 ntBASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Ifi203-203ENSMUST00000123708 3482 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Olfr598-202ENSMUST00000214765 2026 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Gm13762-201ENSMUST00000144908 2612 ntAPPRIS P1 TSL 3 BASIC3.85□□□□□ -1.79
Col28a1Q2UY11 Ndst4-204ENSMUST00000173932 7417 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.79
Col28a1Q2UY11 Olfr1058-202ENSMUST00000213998 1710 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.79
Col28a1Q2UY11 Gm2042-207ENSMUST00000181326 2440 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.79
Col28a1Q2UY11 Btbd35f17-201ENSMUST00000105014 1960 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
Col28a1Q2UY11 A230081H15Rik-201ENSMUST00000218326 2929 ntBASIC3.84□□□□□ -1.79
Col28a1Q2UY11 Gm26075-201ENSMUST00000104062 121 ntBASIC3.84□□□□□ -1.79
Col28a1Q2UY11 Gm25169-201ENSMUST00000104190 129 ntBASIC3.84□□□□□ -1.79
Col28a1Q2UY11 Gm6893-201ENSMUST00000118385 522 ntBASIC3.84□□□□□ -1.79
Col28a1Q2UY11 Gm14362-201ENSMUST00000121679 273 ntBASIC3.84□□□□□ -1.79
Col28a1Q2UY11 Gm13409-201ENSMUST00000122072 546 ntBASIC3.84□□□□□ -1.79
Col28a1Q2UY11 Vmn1r-ps3-201ENSMUST00000122439 917 ntBASIC3.84□□□□□ -1.79
Col28a1Q2UY11 Gm15254-201ENSMUST00000149567 273 ntBASIC3.84□□□□□ -1.79
Col28a1Q2UY11 Gm26028-201ENSMUST00000158660 294 ntBASIC3.84□□□□□ -1.79
Col28a1Q2UY11 Gm3191-201ENSMUST00000167139 346 ntBASIC3.84□□□□□ -1.79
Col28a1Q2UY11 Gm37418-201ENSMUST00000195031 274 ntBASIC3.84□□□□□ -1.79
Col28a1Q2UY11 Gm36985-201ENSMUST00000195595 379 ntBASIC3.84□□□□□ -1.79
Col28a1Q2UY11 Gm43574-201ENSMUST00000196226 809 ntTSL 3 BASIC3.84□□□□□ -1.79
Retrieved 100 of 76,532 protein–RNA pairs in 82 ms