Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lima1Q9ERG0 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lima1Q9ERG0 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC17.06■□□□□ 0.32
Lima1Q9ERG0 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC17.06■□□□□ 0.32
Lima1Q9ERG0 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC17.06■□□□□ 0.32
Lima1Q9ERG0 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Lima1Q9ERG0 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Lima1Q9ERG0 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Lima1Q9ERG0 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Lima1Q9ERG0 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lima1Q9ERG0 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lima1Q9ERG0 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
Lima1Q9ERG0 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lima1Q9ERG0 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lima1Q9ERG0 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lima1Q9ERG0 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lima1Q9ERG0 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC17.05■□□□□ 0.32
Lima1Q9ERG0 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
Lima1Q9ERG0 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Lima1Q9ERG0 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Lima1Q9ERG0 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Lima1Q9ERG0 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC17.05■□□□□ 0.32
Lima1Q9ERG0 Gm26524-201ENSMUST00000192339 390 ntBASIC17.05■□□□□ 0.32
Lima1Q9ERG0 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lima1Q9ERG0 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lima1Q9ERG0 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lima1Q9ERG0 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lima1Q9ERG0 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Lima1Q9ERG0 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lima1Q9ERG0 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lima1Q9ERG0 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Lima1Q9ERG0 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lima1Q9ERG0 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lima1Q9ERG0 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Lima1Q9ERG0 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lima1Q9ERG0 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lima1Q9ERG0 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Lima1Q9ERG0 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lima1Q9ERG0 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lima1Q9ERG0 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lima1Q9ERG0 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC17.04■□□□□ 0.32
Lima1Q9ERG0 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC17.04■□□□□ 0.32
Lima1Q9ERG0 AC140264.2-202ENSMUST00000218746 817 ntBASIC17.04■□□□□ 0.32
Lima1Q9ERG0 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Lima1Q9ERG0 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lima1Q9ERG0 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lima1Q9ERG0 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lima1Q9ERG0 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC17.04■□□□□ 0.32
Lima1Q9ERG0 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC17.04■□□□□ 0.32
Lima1Q9ERG0 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lima1Q9ERG0 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lima1Q9ERG0 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lima1Q9ERG0 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lima1Q9ERG0 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lima1Q9ERG0 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Lima1Q9ERG0 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Lima1Q9ERG0 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC17.03■□□□□ 0.32
Lima1Q9ERG0 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Lima1Q9ERG0 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lima1Q9ERG0 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lima1Q9ERG0 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lima1Q9ERG0 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Lima1Q9ERG0 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Lima1Q9ERG0 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
Lima1Q9ERG0 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lima1Q9ERG0 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lima1Q9ERG0 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
Lima1Q9ERG0 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lima1Q9ERG0 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lima1Q9ERG0 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lima1Q9ERG0 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lima1Q9ERG0 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lima1Q9ERG0 Gm13216-201ENSMUST00000117145 591 ntBASIC17.02■□□□□ 0.32
Lima1Q9ERG0 Slc35b2-207ENSMUST00000226086 850 ntBASIC17.02■□□□□ 0.32
Lima1Q9ERG0 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Lima1Q9ERG0 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Lima1Q9ERG0 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Lima1Q9ERG0 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lima1Q9ERG0 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Lima1Q9ERG0 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
Lima1Q9ERG0 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Lima1Q9ERG0 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Lima1Q9ERG0 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Lima1Q9ERG0 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
Lima1Q9ERG0 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Lima1Q9ERG0 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC17.02■□□□□ 0.31
Lima1Q9ERG0 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
Lima1Q9ERG0 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Lima1Q9ERG0 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lima1Q9ERG0 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lima1Q9ERG0 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lima1Q9ERG0 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Lima1Q9ERG0 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lima1Q9ERG0 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lima1Q9ERG0 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
Lima1Q9ERG0 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lima1Q9ERG0 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
Lima1Q9ERG0 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC17.01■□□□□ 0.31
Lima1Q9ERG0 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC17.01■□□□□ 0.31
Lima1Q9ERG0 Rab3c-203ENSMUST00000224180 967 ntBASIC17.01■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms