Protein–RNA interactions for Protein: Q9CR29

Ccdc43, Coiled-coil domain-containing protein 43, mousemouse

Known RBP Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc43Q9CR29 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Ccdc43Q9CR29 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC19.21■□□□□ 0.67
Ccdc43Q9CR29 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc43Q9CR29 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc43Q9CR29 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc43Q9CR29 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc43Q9CR29 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc43Q9CR29 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc43Q9CR29 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc43Q9CR29 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc43Q9CR29 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC19.2■□□□□ 0.66
Ccdc43Q9CR29 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc43Q9CR29 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc43Q9CR29 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC19.2■□□□□ 0.66
Ccdc43Q9CR29 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc43Q9CR29 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc43Q9CR29 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc43Q9CR29 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc43Q9CR29 Gm6598-201ENSMUST00000202719 2615 ntBASIC19.2■□□□□ 0.66
Ccdc43Q9CR29 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC19.19■□□□□ 0.66
Ccdc43Q9CR29 Gm13158-201ENSMUST00000122007 736 ntBASIC19.19■□□□□ 0.66
Ccdc43Q9CR29 Mir2861-201ENSMUST00000175539 82 ntBASIC19.19■□□□□ 0.66
Ccdc43Q9CR29 Alkbh1-212ENSMUST00000185301 408 ntBASIC19.19■□□□□ 0.66
Ccdc43Q9CR29 Gm29241-201ENSMUST00000189260 1096 ntBASIC19.19■□□□□ 0.66
Ccdc43Q9CR29 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC19.19■□□□□ 0.66
Ccdc43Q9CR29 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc43Q9CR29 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc43Q9CR29 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc43Q9CR29 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc43Q9CR29 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc43Q9CR29 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc43Q9CR29 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc43Q9CR29 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc43Q9CR29 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc43Q9CR29 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc43Q9CR29 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc43Q9CR29 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc43Q9CR29 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc43Q9CR29 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc43Q9CR29 Gm15635-204ENSMUST00000208024 2539 ntBASIC19.18■□□□□ 0.66
Ccdc43Q9CR29 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC19.18■□□□□ 0.66
Ccdc43Q9CR29 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc43Q9CR29 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc43Q9CR29 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC19.18■□□□□ 0.66
Ccdc43Q9CR29 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc43Q9CR29 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc43Q9CR29 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc43Q9CR29 Trmt13-210ENSMUST00000198454 880 ntBASIC19.18■□□□□ 0.66
Ccdc43Q9CR29 AC163280.1-201ENSMUST00000228194 1100 ntBASIC19.18■□□□□ 0.66
Ccdc43Q9CR29 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc43Q9CR29 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
Ccdc43Q9CR29 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc43Q9CR29 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc43Q9CR29 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ccdc43Q9CR29 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ccdc43Q9CR29 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ccdc43Q9CR29 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC19.17■□□□□ 0.66
Ccdc43Q9CR29 Gm5898-201ENSMUST00000121016 2071 ntBASIC19.17■□□□□ 0.66
Ccdc43Q9CR29 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC19.17■□□□□ 0.66
Ccdc43Q9CR29 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC19.17■□□□□ 0.66
Ccdc43Q9CR29 Gm15375-201ENSMUST00000119510 849 ntBASIC19.17■□□□□ 0.66
Ccdc43Q9CR29 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Ccdc43Q9CR29 Gm37820-201ENSMUST00000194021 2147 ntBASIC19.17■□□□□ 0.66
Ccdc43Q9CR29 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ccdc43Q9CR29 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ccdc43Q9CR29 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
Ccdc43Q9CR29 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ccdc43Q9CR29 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ccdc43Q9CR29 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ccdc43Q9CR29 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ccdc43Q9CR29 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Ccdc43Q9CR29 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ccdc43Q9CR29 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Ccdc43Q9CR29 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ccdc43Q9CR29 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ccdc43Q9CR29 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ccdc43Q9CR29 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Ccdc43Q9CR29 Mir6349-201ENSMUST00000184059 97 ntBASIC19.16■□□□□ 0.66
Ccdc43Q9CR29 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ccdc43Q9CR29 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ccdc43Q9CR29 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Ccdc43Q9CR29 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ccdc43Q9CR29 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ccdc43Q9CR29 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ccdc43Q9CR29 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ccdc43Q9CR29 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Ccdc43Q9CR29 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Ccdc43Q9CR29 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Ccdc43Q9CR29 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ccdc43Q9CR29 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ccdc43Q9CR29 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ccdc43Q9CR29 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Ccdc43Q9CR29 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Ccdc43Q9CR29 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ccdc43Q9CR29 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Ccdc43Q9CR29 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ccdc43Q9CR29 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ccdc43Q9CR29 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Ccdc43Q9CR29 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ccdc43Q9CR29 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms