Protein–RNA interactions for Protein: Q99ML9

Rnf111, E3 ubiquitin-protein ligase Arkadia, mousemouse

Predictions only

Length 989 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf111Q99ML9 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rnf111Q99ML9 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rnf111Q99ML9 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC16.75■□□□□ 0.27
Rnf111Q99ML9 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rnf111Q99ML9 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rnf111Q99ML9 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rnf111Q99ML9 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rnf111Q99ML9 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rnf111Q99ML9 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Rnf111Q99ML9 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Rnf111Q99ML9 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf111Q99ML9 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Rnf111Q99ML9 Gm16401-202ENSMUST00000197463 2074 ntBASIC16.74■□□□□ 0.27
Rnf111Q99ML9 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC16.74■□□□□ 0.27
Rnf111Q99ML9 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf111Q99ML9 Gm27275-201ENSMUST00000184318 272 ntBASIC16.74■□□□□ 0.27
Rnf111Q99ML9 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf111Q99ML9 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC16.74■□□□□ 0.27
Rnf111Q99ML9 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC16.74■□□□□ 0.27
Rnf111Q99ML9 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf111Q99ML9 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf111Q99ML9 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf111Q99ML9 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf111Q99ML9 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf111Q99ML9 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf111Q99ML9 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf111Q99ML9 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf111Q99ML9 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf111Q99ML9 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf111Q99ML9 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf111Q99ML9 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf111Q99ML9 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rnf111Q99ML9 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Rnf111Q99ML9 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Rnf111Q99ML9 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rnf111Q99ML9 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rnf111Q99ML9 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Rnf111Q99ML9 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rnf111Q99ML9 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rnf111Q99ML9 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rnf111Q99ML9 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rnf111Q99ML9 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC16.73■□□□□ 0.27
Rnf111Q99ML9 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC16.73■□□□□ 0.27
Rnf111Q99ML9 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rnf111Q99ML9 Mtag2-201ENSMUST00000058665 714 ntBASIC16.73■□□□□ 0.27
Rnf111Q99ML9 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Rnf111Q99ML9 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Rnf111Q99ML9 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rnf111Q99ML9 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Rnf111Q99ML9 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rnf111Q99ML9 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Rnf111Q99ML9 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rnf111Q99ML9 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rnf111Q99ML9 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rnf111Q99ML9 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rnf111Q99ML9 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rnf111Q99ML9 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rnf111Q99ML9 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rnf111Q99ML9 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Rnf111Q99ML9 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rnf111Q99ML9 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rnf111Q99ML9 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rnf111Q99ML9 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rnf111Q99ML9 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rnf111Q99ML9 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rnf111Q99ML9 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rnf111Q99ML9 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC16.72■□□□□ 0.27
Rnf111Q99ML9 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rnf111Q99ML9 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rnf111Q99ML9 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rnf111Q99ML9 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Rnf111Q99ML9 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rnf111Q99ML9 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rnf111Q99ML9 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Rnf111Q99ML9 Gm21596-201ENSMUST00000178049 1316 ntBASIC16.71■□□□□ 0.27
Rnf111Q99ML9 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Rnf111Q99ML9 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Rnf111Q99ML9 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Rnf111Q99ML9 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Rnf111Q99ML9 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Rnf111Q99ML9 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Rnf111Q99ML9 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Rnf111Q99ML9 Gm11249-201ENSMUST00000117071 859 ntBASIC16.71■□□□□ 0.27
Rnf111Q99ML9 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Rnf111Q99ML9 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Rnf111Q99ML9 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Rnf111Q99ML9 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Rnf111Q99ML9 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Rnf111Q99ML9 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Rnf111Q99ML9 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Rnf111Q99ML9 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.26
Rnf111Q99ML9 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Rnf111Q99ML9 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rnf111Q99ML9 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rnf111Q99ML9 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rnf111Q99ML9 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rnf111Q99ML9 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Rnf111Q99ML9 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rnf111Q99ML9 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rnf111Q99ML9 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 15.5 ms