Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim47Q8C0E3 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim47Q8C0E3 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim47Q8C0E3 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim47Q8C0E3 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim47Q8C0E3 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
Trim47Q8C0E3 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Trim47Q8C0E3 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim47Q8C0E3 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC19.12■□□□□ 0.65
Trim47Q8C0E3 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim47Q8C0E3 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim47Q8C0E3 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Trim47Q8C0E3 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim47Q8C0E3 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim47Q8C0E3 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
Trim47Q8C0E3 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim47Q8C0E3 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Trim47Q8C0E3 Gm7370-201ENSMUST00000219471 767 ntBASIC19.12■□□□□ 0.65
Trim47Q8C0E3 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim47Q8C0E3 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim47Q8C0E3 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim47Q8C0E3 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim47Q8C0E3 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim47Q8C0E3 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC19.12■□□□□ 0.65
Trim47Q8C0E3 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim47Q8C0E3 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Trim47Q8C0E3 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Trim47Q8C0E3 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim47Q8C0E3 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim47Q8C0E3 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim47Q8C0E3 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim47Q8C0E3 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Trim47Q8C0E3 Mir5130-201ENSMUST00000175160 84 ntBASIC19.11■□□□□ 0.65
Trim47Q8C0E3 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC19.11■□□□□ 0.65
Trim47Q8C0E3 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC19.11■□□□□ 0.65
Trim47Q8C0E3 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim47Q8C0E3 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim47Q8C0E3 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Trim47Q8C0E3 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim47Q8C0E3 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim47Q8C0E3 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Trim47Q8C0E3 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trim47Q8C0E3 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Trim47Q8C0E3 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trim47Q8C0E3 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC19.1■□□□□ 0.65
Trim47Q8C0E3 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Trim47Q8C0E3 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC19.1■□□□□ 0.65
Trim47Q8C0E3 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim47Q8C0E3 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim47Q8C0E3 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim47Q8C0E3 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trim47Q8C0E3 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim47Q8C0E3 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim47Q8C0E3 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Trim47Q8C0E3 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim47Q8C0E3 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Trim47Q8C0E3 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim47Q8C0E3 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC19.09■□□□□ 0.65
Trim47Q8C0E3 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim47Q8C0E3 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim47Q8C0E3 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim47Q8C0E3 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC19.09■□□□□ 0.65
Trim47Q8C0E3 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Trim47Q8C0E3 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trim47Q8C0E3 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trim47Q8C0E3 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trim47Q8C0E3 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trim47Q8C0E3 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
Trim47Q8C0E3 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Trim47Q8C0E3 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC19.08■□□□□ 0.64
Trim47Q8C0E3 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trim47Q8C0E3 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Trim47Q8C0E3 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Trim47Q8C0E3 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC19.07■□□□□ 0.64
Trim47Q8C0E3 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim47Q8C0E3 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Trim47Q8C0E3 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Trim47Q8C0E3 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim47Q8C0E3 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Trim47Q8C0E3 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC19.07■□□□□ 0.64
Trim47Q8C0E3 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
Trim47Q8C0E3 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC19.07■□□□□ 0.64
Trim47Q8C0E3 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC19.07■□□□□ 0.64
Trim47Q8C0E3 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC19.07■□□□□ 0.64
Trim47Q8C0E3 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Trim47Q8C0E3 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim47Q8C0E3 Gm37811-201ENSMUST00000192416 2601 ntBASIC19.07■□□□□ 0.64
Trim47Q8C0E3 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim47Q8C0E3 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC19.07■□□□□ 0.64
Trim47Q8C0E3 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim47Q8C0E3 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim47Q8C0E3 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Trim47Q8C0E3 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trim47Q8C0E3 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC19.06■□□□□ 0.64
Trim47Q8C0E3 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC19.06■□□□□ 0.64
Trim47Q8C0E3 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
Trim47Q8C0E3 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trim47Q8C0E3 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC19.06■□□□□ 0.64
Trim47Q8C0E3 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Trim47Q8C0E3 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 14.5 ms