Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Gm13158-201ENSMUST00000122007 736 ntBASIC17.99■□□□□ 0.47
Ccdc40Q8BI79 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC17.99■□□□□ 0.47
Ccdc40Q8BI79 Alkbh1-212ENSMUST00000185301 408 ntBASIC17.99■□□□□ 0.47
Ccdc40Q8BI79 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ccdc40Q8BI79 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ccdc40Q8BI79 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ccdc40Q8BI79 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ccdc40Q8BI79 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
Ccdc40Q8BI79 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ccdc40Q8BI79 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Ccdc40Q8BI79 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC17.99■□□□□ 0.47
Ccdc40Q8BI79 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ccdc40Q8BI79 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Ccdc40Q8BI79 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ccdc40Q8BI79 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Ccdc40Q8BI79 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Ccdc40Q8BI79 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Ccdc40Q8BI79 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ccdc40Q8BI79 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ccdc40Q8BI79 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ccdc40Q8BI79 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
Ccdc40Q8BI79 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ccdc40Q8BI79 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC17.98■□□□□ 0.47
Ccdc40Q8BI79 Gm11643-201ENSMUST00000119578 864 ntBASIC17.98■□□□□ 0.47
Ccdc40Q8BI79 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Ccdc40Q8BI79 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC17.98■□□□□ 0.47
Ccdc40Q8BI79 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC17.98■□□□□ 0.47
Ccdc40Q8BI79 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ccdc40Q8BI79 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ccdc40Q8BI79 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ccdc40Q8BI79 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
Ccdc40Q8BI79 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Ccdc40Q8BI79 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc40Q8BI79 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc40Q8BI79 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Ccdc40Q8BI79 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc40Q8BI79 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc40Q8BI79 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc40Q8BI79 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC17.97■□□□□ 0.47
Ccdc40Q8BI79 Gm27275-201ENSMUST00000184318 272 ntBASIC17.97■□□□□ 0.47
Ccdc40Q8BI79 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC17.97■□□□□ 0.47
Ccdc40Q8BI79 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc40Q8BI79 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc40Q8BI79 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc40Q8BI79 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc40Q8BI79 Gm43598-201ENSMUST00000202482 2479 ntBASIC17.97■□□□□ 0.47
Ccdc40Q8BI79 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Ccdc40Q8BI79 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc40Q8BI79 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Ccdc40Q8BI79 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc40Q8BI79 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc40Q8BI79 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc40Q8BI79 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc40Q8BI79 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc40Q8BI79 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC17.96■□□□□ 0.47
Ccdc40Q8BI79 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc40Q8BI79 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc40Q8BI79 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc40Q8BI79 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc40Q8BI79 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Ccdc40Q8BI79 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc40Q8BI79 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc40Q8BI79 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc40Q8BI79 Haglr-201ENSMUST00000100000 2085 ntBASIC17.96■□□□□ 0.47
Ccdc40Q8BI79 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc40Q8BI79 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc40Q8BI79 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc40Q8BI79 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc40Q8BI79 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc40Q8BI79 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc40Q8BI79 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc40Q8BI79 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc40Q8BI79 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc40Q8BI79 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Ccdc40Q8BI79 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC17.95■□□□□ 0.46
Ccdc40Q8BI79 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc40Q8BI79 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc40Q8BI79 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc40Q8BI79 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc40Q8BI79 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc40Q8BI79 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc40Q8BI79 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc40Q8BI79 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc40Q8BI79 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc40Q8BI79 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc40Q8BI79 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc40Q8BI79 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc40Q8BI79 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc40Q8BI79 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc40Q8BI79 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc40Q8BI79 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc40Q8BI79 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc40Q8BI79 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc40Q8BI79 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc40Q8BI79 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc40Q8BI79 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc40Q8BI79 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc40Q8BI79 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc40Q8BI79 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
Ccdc40Q8BI79 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms