Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ubfd1Q78JW9 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Ubfd1Q78JW9 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ubfd1Q78JW9 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Ubfd1Q78JW9 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Ubfd1Q78JW9 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ubfd1Q78JW9 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ubfd1Q78JW9 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ubfd1Q78JW9 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC16.81■□□□□ 0.28
Ubfd1Q78JW9 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Ubfd1Q78JW9 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
Ubfd1Q78JW9 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC16.81■□□□□ 0.28
Ubfd1Q78JW9 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Ubfd1Q78JW9 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ubfd1Q78JW9 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Ubfd1Q78JW9 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ubfd1Q78JW9 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC16.81■□□□□ 0.28
Ubfd1Q78JW9 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ubfd1Q78JW9 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ubfd1Q78JW9 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Ubfd1Q78JW9 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
Ubfd1Q78JW9 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ubfd1Q78JW9 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC16.8■□□□□ 0.28
Ubfd1Q78JW9 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC16.8■□□□□ 0.28
Ubfd1Q78JW9 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC16.8■□□□□ 0.28
Ubfd1Q78JW9 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ubfd1Q78JW9 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Ubfd1Q78JW9 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC16.8■□□□□ 0.28
Ubfd1Q78JW9 AA414768-201ENSMUST00000121924 1257 ntBASIC16.8■□□□□ 0.28
Ubfd1Q78JW9 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC16.8■□□□□ 0.28
Ubfd1Q78JW9 Gm7213-201ENSMUST00000215977 950 ntBASIC16.8■□□□□ 0.28
Ubfd1Q78JW9 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Ubfd1Q78JW9 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Ubfd1Q78JW9 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ubfd1Q78JW9 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Ubfd1Q78JW9 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ubfd1Q78JW9 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ubfd1Q78JW9 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ubfd1Q78JW9 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ubfd1Q78JW9 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ubfd1Q78JW9 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ubfd1Q78JW9 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Ubfd1Q78JW9 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Ubfd1Q78JW9 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ubfd1Q78JW9 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC16.79■□□□□ 0.28
Ubfd1Q78JW9 Gm6728-201ENSMUST00000178117 1065 ntBASIC16.79■□□□□ 0.28
Ubfd1Q78JW9 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC16.79■□□□□ 0.28
Ubfd1Q78JW9 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC16.79■□□□□ 0.28
Ubfd1Q78JW9 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Ubfd1Q78JW9 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ubfd1Q78JW9 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC16.79■□□□□ 0.28
Ubfd1Q78JW9 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Ubfd1Q78JW9 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ubfd1Q78JW9 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ubfd1Q78JW9 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Ubfd1Q78JW9 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC16.78■□□□□ 0.28
Ubfd1Q78JW9 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Ubfd1Q78JW9 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ubfd1Q78JW9 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
Ubfd1Q78JW9 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ubfd1Q78JW9 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Ubfd1Q78JW9 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC16.78■□□□□ 0.28
Ubfd1Q78JW9 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ubfd1Q78JW9 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Ubfd1Q78JW9 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ubfd1Q78JW9 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC16.78■□□□□ 0.28
Ubfd1Q78JW9 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Ubfd1Q78JW9 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC16.78■□□□□ 0.28
Ubfd1Q78JW9 Gm21559-201ENSMUST00000220638 855 ntBASIC16.78■□□□□ 0.28
Ubfd1Q78JW9 Gm8587-201ENSMUST00000076538 843 ntBASIC16.78■□□□□ 0.28
Ubfd1Q78JW9 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ubfd1Q78JW9 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Ubfd1Q78JW9 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ubfd1Q78JW9 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ubfd1Q78JW9 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
Ubfd1Q78JW9 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Ubfd1Q78JW9 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC16.77■□□□□ 0.28
Ubfd1Q78JW9 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ubfd1Q78JW9 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC16.77■□□□□ 0.28
Ubfd1Q78JW9 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Ubfd1Q78JW9 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ubfd1Q78JW9 Gm10461-201ENSMUST00000202073 4786 ntBASIC16.77■□□□□ 0.28
Ubfd1Q78JW9 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ubfd1Q78JW9 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Ubfd1Q78JW9 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC16.77■□□□□ 0.28
Ubfd1Q78JW9 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ubfd1Q78JW9 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC16.77■□□□□ 0.28
Ubfd1Q78JW9 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC16.77■□□□□ 0.28
Ubfd1Q78JW9 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ubfd1Q78JW9 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ubfd1Q78JW9 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Ubfd1Q78JW9 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Ubfd1Q78JW9 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Ubfd1Q78JW9 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Ubfd1Q78JW9 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Ubfd1Q78JW9 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Ubfd1Q78JW9 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Ubfd1Q78JW9 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ubfd1Q78JW9 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ubfd1Q78JW9 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms