Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Sh3rf1Q69ZI1 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Sh3rf1Q69ZI1 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Sh3rf1Q69ZI1 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Sh3rf1Q69ZI1 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Sh3rf1Q69ZI1 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Sh3rf1Q69ZI1 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Sh3rf1Q69ZI1 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Sh3rf1Q69ZI1 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Sh3rf1Q69ZI1 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Sh3rf1Q69ZI1 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Sh3rf1Q69ZI1 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC17.5■□□□□ 0.39
Sh3rf1Q69ZI1 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Sh3rf1Q69ZI1 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC17.5■□□□□ 0.39
Sh3rf1Q69ZI1 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Sh3rf1Q69ZI1 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Sh3rf1Q69ZI1 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Sh3rf1Q69ZI1 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Sh3rf1Q69ZI1 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Sh3rf1Q69ZI1 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC17.49■□□□□ 0.39
Sh3rf1Q69ZI1 Gm10698-201ENSMUST00000182663 604 ntBASIC17.49■□□□□ 0.39
Sh3rf1Q69ZI1 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC17.49■□□□□ 0.39
Sh3rf1Q69ZI1 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC17.49■□□□□ 0.39
Sh3rf1Q69ZI1 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Sh3rf1Q69ZI1 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Sh3rf1Q69ZI1 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Sh3rf1Q69ZI1 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Sh3rf1Q69ZI1 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Sh3rf1Q69ZI1 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Sh3rf1Q69ZI1 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Sh3rf1Q69ZI1 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Sh3rf1Q69ZI1 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Sh3rf1Q69ZI1 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Sh3rf1Q69ZI1 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Sh3rf1Q69ZI1 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC17.48■□□□□ 0.39
Sh3rf1Q69ZI1 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Sh3rf1Q69ZI1 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Sh3rf1Q69ZI1 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Sh3rf1Q69ZI1 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Sh3rf1Q69ZI1 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Sh3rf1Q69ZI1 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Sh3rf1Q69ZI1 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Sh3rf1Q69ZI1 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC17.48■□□□□ 0.39
Sh3rf1Q69ZI1 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Sh3rf1Q69ZI1 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
Sh3rf1Q69ZI1 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Sh3rf1Q69ZI1 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Sh3rf1Q69ZI1 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Sh3rf1Q69ZI1 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Sh3rf1Q69ZI1 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Sh3rf1Q69ZI1 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC17.47■□□□□ 0.39
Sh3rf1Q69ZI1 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Sh3rf1Q69ZI1 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Sh3rf1Q69ZI1 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Sh3rf1Q69ZI1 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Sh3rf1Q69ZI1 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Sh3rf1Q69ZI1 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Sh3rf1Q69ZI1 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
Sh3rf1Q69ZI1 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC17.47■□□□□ 0.39
Sh3rf1Q69ZI1 AL672049.1-201ENSMUST00000197943 91 ntBASIC17.47■□□□□ 0.39
Sh3rf1Q69ZI1 AC140264.2-202ENSMUST00000218746 817 ntBASIC17.47■□□□□ 0.39
Sh3rf1Q69ZI1 AC154649.1-201ENSMUST00000227392 384 ntBASIC17.47■□□□□ 0.39
Sh3rf1Q69ZI1 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
Sh3rf1Q69ZI1 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Sh3rf1Q69ZI1 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Sh3rf1Q69ZI1 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Sh3rf1Q69ZI1 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Sh3rf1Q69ZI1 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Sh3rf1Q69ZI1 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Sh3rf1Q69ZI1 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Sh3rf1Q69ZI1 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Sh3rf1Q69ZI1 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Sh3rf1Q69ZI1 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Sh3rf1Q69ZI1 Haglr-201ENSMUST00000100000 2085 ntBASIC17.46■□□□□ 0.39
Sh3rf1Q69ZI1 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Sh3rf1Q69ZI1 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Sh3rf1Q69ZI1 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Sh3rf1Q69ZI1 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Sh3rf1Q69ZI1 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Sh3rf1Q69ZI1 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Sh3rf1Q69ZI1 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Sh3rf1Q69ZI1 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Sh3rf1Q69ZI1 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Sh3rf1Q69ZI1 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Sh3rf1Q69ZI1 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Sh3rf1Q69ZI1 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Sh3rf1Q69ZI1 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Sh3rf1Q69ZI1 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Sh3rf1Q69ZI1 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
Sh3rf1Q69ZI1 Gm10461-201ENSMUST00000202073 4786 ntBASIC17.45■□□□□ 0.38
Sh3rf1Q69ZI1 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Sh3rf1Q69ZI1 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Sh3rf1Q69ZI1 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Sh3rf1Q69ZI1 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Sh3rf1Q69ZI1 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Sh3rf1Q69ZI1 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Sh3rf1Q69ZI1 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Sh3rf1Q69ZI1 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Sh3rf1Q69ZI1 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Sh3rf1Q69ZI1 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 38.5 ms