Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col11a1Q61245 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col11a1Q61245 AC108846.1-201ENSMUST00000214531 513 ntBASIC19.37■□□□□ 0.69
Col11a1Q61245 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col11a1Q61245 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Col11a1Q61245 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC19.37■□□□□ 0.69
Col11a1Q61245 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC19.37■□□□□ 0.69
Col11a1Q61245 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC19.37■□□□□ 0.69
Col11a1Q61245 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC19.37■□□□□ 0.69
Col11a1Q61245 AC159093.1-201ENSMUST00000227779 380 ntBASIC19.37■□□□□ 0.69
Col11a1Q61245 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Col11a1Q61245 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col11a1Q61245 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Col11a1Q61245 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col11a1Q61245 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Col11a1Q61245 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col11a1Q61245 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Col11a1Q61245 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col11a1Q61245 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col11a1Q61245 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC19.36■□□□□ 0.69
Col11a1Q61245 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC19.36■□□□□ 0.69
Col11a1Q61245 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Col11a1Q61245 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col11a1Q61245 Gm13830-205ENSMUST00000201195 1155 ntBASIC19.36■□□□□ 0.69
Col11a1Q61245 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC19.36■□□□□ 0.69
Col11a1Q61245 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC19.36■□□□□ 0.69
Col11a1Q61245 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC19.36■□□□□ 0.69
Col11a1Q61245 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col11a1Q61245 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col11a1Q61245 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col11a1Q61245 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Col11a1Q61245 Gm6190-201ENSMUST00000220683 1374 ntBASIC19.36■□□□□ 0.69
Col11a1Q61245 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC19.36■□□□□ 0.69
Col11a1Q61245 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC19.36■□□□□ 0.69
Col11a1Q61245 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col11a1Q61245 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col11a1Q61245 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC19.35■□□□□ 0.69
Col11a1Q61245 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col11a1Q61245 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC19.35■□□□□ 0.69
Col11a1Q61245 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col11a1Q61245 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col11a1Q61245 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col11a1Q61245 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Col11a1Q61245 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Col11a1Q61245 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Col11a1Q61245 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Col11a1Q61245 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Col11a1Q61245 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Col11a1Q61245 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col11a1Q61245 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Col11a1Q61245 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC19.35■□□□□ 0.69
Col11a1Q61245 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Col11a1Q61245 Gm8000-201ENSMUST00000188378 592 ntBASIC19.35■□□□□ 0.69
Col11a1Q61245 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Col11a1Q61245 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Col11a1Q61245 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col11a1Q61245 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col11a1Q61245 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC19.34■□□□□ 0.69
Col11a1Q61245 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col11a1Q61245 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC19.34■□□□□ 0.69
Col11a1Q61245 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
Col11a1Q61245 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Col11a1Q61245 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col11a1Q61245 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col11a1Q61245 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col11a1Q61245 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Col11a1Q61245 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col11a1Q61245 Gm5264-201ENSMUST00000190584 848 ntBASIC19.33■□□□□ 0.69
Col11a1Q61245 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col11a1Q61245 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col11a1Q61245 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col11a1Q61245 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col11a1Q61245 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
Col11a1Q61245 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col11a1Q61245 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col11a1Q61245 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col11a1Q61245 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col11a1Q61245 Gm15165-201ENSMUST00000118140 502 ntBASIC19.32■□□□□ 0.68
Col11a1Q61245 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC19.32■□□□□ 0.68
Col11a1Q61245 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col11a1Q61245 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col11a1Q61245 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col11a1Q61245 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col11a1Q61245 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col11a1Q61245 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Col11a1Q61245 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
Col11a1Q61245 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col11a1Q61245 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Col11a1Q61245 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col11a1Q61245 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col11a1Q61245 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col11a1Q61245 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col11a1Q61245 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col11a1Q61245 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Col11a1Q61245 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Col11a1Q61245 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC19.31■□□□□ 0.68
Col11a1Q61245 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Col11a1Q61245 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col11a1Q61245 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col11a1Q61245 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms