Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CtcfQ61164 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
CtcfQ61164 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC19■□□□□ 0.63
CtcfQ61164 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
CtcfQ61164 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CtcfQ61164 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC19■□□□□ 0.63
CtcfQ61164 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC19■□□□□ 0.63
CtcfQ61164 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC19■□□□□ 0.63
CtcfQ61164 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC19■□□□□ 0.63
CtcfQ61164 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
CtcfQ61164 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CtcfQ61164 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC19■□□□□ 0.63
CtcfQ61164 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC19■□□□□ 0.63
CtcfQ61164 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CtcfQ61164 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CtcfQ61164 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CtcfQ61164 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CtcfQ61164 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CtcfQ61164 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CtcfQ61164 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CtcfQ61164 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CtcfQ61164 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CtcfQ61164 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CtcfQ61164 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CtcfQ61164 Gm8969-201ENSMUST00000199694 526 ntBASIC18.99■□□□□ 0.63
CtcfQ61164 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CtcfQ61164 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CtcfQ61164 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CtcfQ61164 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CtcfQ61164 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CtcfQ61164 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC18.99■□□□□ 0.63
CtcfQ61164 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CtcfQ61164 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CtcfQ61164 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CtcfQ61164 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CtcfQ61164 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CtcfQ61164 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CtcfQ61164 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CtcfQ61164 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC18.98■□□□□ 0.63
CtcfQ61164 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
CtcfQ61164 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CtcfQ61164 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
CtcfQ61164 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC18.98■□□□□ 0.63
CtcfQ61164 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CtcfQ61164 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CtcfQ61164 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CtcfQ61164 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
CtcfQ61164 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CtcfQ61164 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CtcfQ61164 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CtcfQ61164 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CtcfQ61164 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CtcfQ61164 Gm15847-201ENSMUST00000121417 1065 ntBASIC18.97■□□□□ 0.63
CtcfQ61164 Mir2861-201ENSMUST00000175539 82 ntBASIC18.97■□□□□ 0.63
CtcfQ61164 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC18.97■□□□□ 0.63
CtcfQ61164 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC18.97■□□□□ 0.63
CtcfQ61164 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CtcfQ61164 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
CtcfQ61164 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CtcfQ61164 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CtcfQ61164 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
CtcfQ61164 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
CtcfQ61164 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC18.97■□□□□ 0.63
CtcfQ61164 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CtcfQ61164 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CtcfQ61164 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CtcfQ61164 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
CtcfQ61164 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
CtcfQ61164 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CtcfQ61164 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
CtcfQ61164 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CtcfQ61164 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CtcfQ61164 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CtcfQ61164 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CtcfQ61164 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
CtcfQ61164 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CtcfQ61164 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC18.96■□□□□ 0.63
CtcfQ61164 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC18.96■□□□□ 0.63
CtcfQ61164 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CtcfQ61164 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CtcfQ61164 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC18.96■□□□□ 0.63
CtcfQ61164 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CtcfQ61164 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CtcfQ61164 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CtcfQ61164 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CtcfQ61164 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
CtcfQ61164 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CtcfQ61164 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CtcfQ61164 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC18.96■□□□□ 0.63
CtcfQ61164 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC18.96■□□□□ 0.63
CtcfQ61164 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CtcfQ61164 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CtcfQ61164 Flg-201ENSMUST00000050758 1488 ntBASIC18.96■□□□□ 0.63
CtcfQ61164 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CtcfQ61164 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CtcfQ61164 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CtcfQ61164 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CtcfQ61164 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CtcfQ61164 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
CtcfQ61164 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms