Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Ddb1Q3U1J4 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
Ddb1Q3U1J4 Idnk-204ENSMUST00000226010 1898 ntBASIC21.92■■□□□ 1.1
Ddb1Q3U1J4 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Ddb1Q3U1J4 Gm43545-201ENSMUST00000196765 2779 ntBASIC21.92■■□□□ 1.1
Ddb1Q3U1J4 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Ddb1Q3U1J4 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
Ddb1Q3U1J4 Gm7862-201ENSMUST00000121461 292 ntBASIC21.92■■□□□ 1.1
Ddb1Q3U1J4 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
Ddb1Q3U1J4 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
Ddb1Q3U1J4 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
Ddb1Q3U1J4 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Ddb1Q3U1J4 Gm6296-201ENSMUST00000222599 943 ntBASIC21.92■■□□□ 1.1
Ddb1Q3U1J4 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Ddb1Q3U1J4 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Ddb1Q3U1J4 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC21.92■■□□□ 1.1
Ddb1Q3U1J4 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Ddb1Q3U1J4 Gm5784-201ENSMUST00000179344 2478 ntBASIC21.91■■□□□ 1.1
Ddb1Q3U1J4 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
Ddb1Q3U1J4 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Ddb1Q3U1J4 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
Ddb1Q3U1J4 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
Ddb1Q3U1J4 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Ddb1Q3U1J4 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Ddb1Q3U1J4 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
Ddb1Q3U1J4 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Ddb1Q3U1J4 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Ddb1Q3U1J4 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
Ddb1Q3U1J4 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC21.91■■□□□ 1.1
Ddb1Q3U1J4 Gm13186-201ENSMUST00000118031 316 ntBASIC21.91■■□□□ 1.1
Ddb1Q3U1J4 Gm11594-201ENSMUST00000122313 162 ntBASIC21.91■■□□□ 1.1
Ddb1Q3U1J4 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Ddb1Q3U1J4 Mir5131-201ENSMUST00000175426 93 ntBASIC21.91■■□□□ 1.1
Ddb1Q3U1J4 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Ddb1Q3U1J4 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Ddb1Q3U1J4 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Ddb1Q3U1J4 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Ddb1Q3U1J4 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
Ddb1Q3U1J4 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC21.91■■□□□ 1.1
Ddb1Q3U1J4 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Ddb1Q3U1J4 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Ddb1Q3U1J4 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Ddb1Q3U1J4 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Ddb1Q3U1J4 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Ddb1Q3U1J4 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Ddb1Q3U1J4 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
Ddb1Q3U1J4 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
Ddb1Q3U1J4 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
Ddb1Q3U1J4 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Ddb1Q3U1J4 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC21.9■■□□□ 1.1
Ddb1Q3U1J4 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC21.9■■□□□ 1.1
Ddb1Q3U1J4 Gm8000-201ENSMUST00000188378 592 ntBASIC21.9■■□□□ 1.1
Ddb1Q3U1J4 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Ddb1Q3U1J4 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Ddb1Q3U1J4 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Ddb1Q3U1J4 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Ddb1Q3U1J4 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Ddb1Q3U1J4 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Ddb1Q3U1J4 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Ddb1Q3U1J4 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Ddb1Q3U1J4 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Ddb1Q3U1J4 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
Ddb1Q3U1J4 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Ddb1Q3U1J4 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
Ddb1Q3U1J4 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Ddb1Q3U1J4 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC21.89■■□□□ 1.09
Ddb1Q3U1J4 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC21.89■■□□□ 1.09
Ddb1Q3U1J4 Gm27000-201ENSMUST00000182943 842 ntBASIC21.89■■□□□ 1.09
Ddb1Q3U1J4 Cmtm5-203ENSMUST00000227441 610 ntBASIC21.89■■□□□ 1.09
Ddb1Q3U1J4 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Ddb1Q3U1J4 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Ddb1Q3U1J4 Phf7-203ENSMUST00000226565 1971 ntBASIC21.88■■□□□ 1.09
Ddb1Q3U1J4 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Ddb1Q3U1J4 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
Ddb1Q3U1J4 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Ddb1Q3U1J4 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC21.88■■□□□ 1.09
Ddb1Q3U1J4 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC21.88■■□□□ 1.09
Ddb1Q3U1J4 AC153794.1-201ENSMUST00000169148 126 ntBASIC21.88■■□□□ 1.09
Ddb1Q3U1J4 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC21.88■■□□□ 1.09
Ddb1Q3U1J4 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Ddb1Q3U1J4 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Ddb1Q3U1J4 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Ddb1Q3U1J4 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC21.88■■□□□ 1.09
Ddb1Q3U1J4 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Ddb1Q3U1J4 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
Ddb1Q3U1J4 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
Ddb1Q3U1J4 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Ddb1Q3U1J4 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Ddb1Q3U1J4 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Ddb1Q3U1J4 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
Ddb1Q3U1J4 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC21.87■■□□□ 1.09
Ddb1Q3U1J4 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Ddb1Q3U1J4 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Ddb1Q3U1J4 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Ddb1Q3U1J4 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Ddb1Q3U1J4 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Ddb1Q3U1J4 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
Ddb1Q3U1J4 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Ddb1Q3U1J4 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ddb1Q3U1J4 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms