Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC16.69■□□□□ 0.26
Ptchd3Q0EEE2 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ptchd3Q0EEE2 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ptchd3Q0EEE2 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ptchd3Q0EEE2 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ptchd3Q0EEE2 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ptchd3Q0EEE2 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ptchd3Q0EEE2 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ptchd3Q0EEE2 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ptchd3Q0EEE2 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ptchd3Q0EEE2 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ptchd3Q0EEE2 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ptchd3Q0EEE2 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Ptchd3Q0EEE2 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Ptchd3Q0EEE2 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ptchd3Q0EEE2 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ptchd3Q0EEE2 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ptchd3Q0EEE2 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ptchd3Q0EEE2 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ptchd3Q0EEE2 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Ptchd3Q0EEE2 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ptchd3Q0EEE2 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
Ptchd3Q0EEE2 Gm13148-201ENSMUST00000118892 745 ntBASIC16.68■□□□□ 0.26
Ptchd3Q0EEE2 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ptchd3Q0EEE2 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ptchd3Q0EEE2 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ptchd3Q0EEE2 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ptchd3Q0EEE2 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ptchd3Q0EEE2 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ptchd3Q0EEE2 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ptchd3Q0EEE2 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Ptchd3Q0EEE2 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ptchd3Q0EEE2 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Ptchd3Q0EEE2 Gm26596-201ENSMUST00000180464 2655 ntBASIC16.67■□□□□ 0.26
Ptchd3Q0EEE2 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ptchd3Q0EEE2 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC16.67■□□□□ 0.26
Ptchd3Q0EEE2 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ptchd3Q0EEE2 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ptchd3Q0EEE2 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ptchd3Q0EEE2 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ptchd3Q0EEE2 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ptchd3Q0EEE2 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC16.67■□□□□ 0.26
Ptchd3Q0EEE2 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC16.67■□□□□ 0.26
Ptchd3Q0EEE2 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC16.67■□□□□ 0.26
Ptchd3Q0EEE2 Slc35b2-207ENSMUST00000226086 850 ntBASIC16.67■□□□□ 0.26
Ptchd3Q0EEE2 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ptchd3Q0EEE2 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Ptchd3Q0EEE2 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ptchd3Q0EEE2 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Ptchd3Q0EEE2 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ptchd3Q0EEE2 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Ptchd3Q0EEE2 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ptchd3Q0EEE2 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ptchd3Q0EEE2 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ptchd3Q0EEE2 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ptchd3Q0EEE2 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Ptchd3Q0EEE2 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ptchd3Q0EEE2 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ptchd3Q0EEE2 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ptchd3Q0EEE2 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ptchd3Q0EEE2 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ptchd3Q0EEE2 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Ptchd3Q0EEE2 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ptchd3Q0EEE2 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ptchd3Q0EEE2 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ptchd3Q0EEE2 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Ptchd3Q0EEE2 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Ptchd3Q0EEE2 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ptchd3Q0EEE2 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ptchd3Q0EEE2 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ptchd3Q0EEE2 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ptchd3Q0EEE2 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Ptchd3Q0EEE2 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ptchd3Q0EEE2 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ptchd3Q0EEE2 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ptchd3Q0EEE2 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Ptchd3Q0EEE2 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ptchd3Q0EEE2 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Ptchd3Q0EEE2 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC16.65■□□□□ 0.26
Ptchd3Q0EEE2 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Ptchd3Q0EEE2 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
Ptchd3Q0EEE2 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Ptchd3Q0EEE2 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Ptchd3Q0EEE2 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Ptchd3Q0EEE2 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Ptchd3Q0EEE2 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Ptchd3Q0EEE2 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ptchd3Q0EEE2 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Ptchd3Q0EEE2 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ptchd3Q0EEE2 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC16.65■□□□□ 0.26
Ptchd3Q0EEE2 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.26
Ptchd3Q0EEE2 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
Ptchd3Q0EEE2 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
Ptchd3Q0EEE2 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Ptchd3Q0EEE2 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
Ptchd3Q0EEE2 AC125311.2-201ENSMUST00000227477 1940 ntBASIC16.64■□□□□ 0.26
Ptchd3Q0EEE2 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Ptchd3Q0EEE2 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC16.64■□□□□ 0.25
Ptchd3Q0EEE2 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.25
Ptchd3Q0EEE2 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms