Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Col8a1Q00780 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col8a1Q00780 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC14.69□□□□□ -0.06
Col8a1Q00780 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC14.69□□□□□ -0.06
Col8a1Q00780 Gm27459-201ENSMUST00000184860 107 ntBASIC14.69□□□□□ -0.06
Col8a1Q00780 AC132104.2-201ENSMUST00000215011 266 ntBASIC14.69□□□□□ -0.06
Col8a1Q00780 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
Col8a1Q00780 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC14.69□□□□□ -0.06
Col8a1Q00780 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col8a1Q00780 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Col8a1Q00780 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col8a1Q00780 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Col8a1Q00780 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Col8a1Q00780 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
Col8a1Q00780 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col8a1Q00780 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Col8a1Q00780 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Col8a1Q00780 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Col8a1Q00780 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col8a1Q00780 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col8a1Q00780 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
Col8a1Q00780 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col8a1Q00780 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col8a1Q00780 Gm11860-201ENSMUST00000122346 1010 ntBASIC14.68□□□□□ -0.06
Col8a1Q00780 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col8a1Q00780 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Col8a1Q00780 Gm37935-201ENSMUST00000192012 982 ntBASIC14.68□□□□□ -0.06
Col8a1Q00780 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC14.68□□□□□ -0.06
Col8a1Q00780 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col8a1Q00780 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col8a1Q00780 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Col8a1Q00780 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
Col8a1Q00780 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col8a1Q00780 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
Col8a1Q00780 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
Col8a1Q00780 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Col8a1Q00780 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Col8a1Q00780 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col8a1Q00780 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col8a1Q00780 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col8a1Q00780 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Col8a1Q00780 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC14.67□□□□□ -0.06
Col8a1Q00780 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col8a1Q00780 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col8a1Q00780 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col8a1Q00780 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC14.67□□□□□ -0.06
Col8a1Q00780 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Col8a1Q00780 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC14.67□□□□□ -0.06
Col8a1Q00780 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
Col8a1Q00780 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC14.67□□□□□ -0.06
Col8a1Q00780 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
Col8a1Q00780 Gm43347-201ENSMUST00000200226 580 ntBASIC14.67□□□□□ -0.06
Col8a1Q00780 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col8a1Q00780 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC14.67□□□□□ -0.06
Col8a1Q00780 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Col8a1Q00780 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col8a1Q00780 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
Col8a1Q00780 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col8a1Q00780 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col8a1Q00780 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Col8a1Q00780 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col8a1Q00780 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col8a1Q00780 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col8a1Q00780 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Col8a1Q00780 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col8a1Q00780 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col8a1Q00780 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
Col8a1Q00780 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
Col8a1Q00780 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col8a1Q00780 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col8a1Q00780 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Col8a1Q00780 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC14.66□□□□□ -0.06
Col8a1Q00780 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col8a1Q00780 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC14.66□□□□□ -0.06
Col8a1Q00780 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Col8a1Q00780 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col8a1Q00780 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col8a1Q00780 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Col8a1Q00780 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Col8a1Q00780 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col8a1Q00780 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC14.65□□□□□ -0.06
Col8a1Q00780 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Col8a1Q00780 Gm18733-201ENSMUST00000173950 856 ntBASIC14.65□□□□□ -0.06
Col8a1Q00780 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC14.65□□□□□ -0.06
Col8a1Q00780 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Col8a1Q00780 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col8a1Q00780 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Col8a1Q00780 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col8a1Q00780 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Col8a1Q00780 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Col8a1Q00780 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC14.65□□□□□ -0.06
Col8a1Q00780 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC14.65□□□□□ -0.06
Col8a1Q00780 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col8a1Q00780 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col8a1Q00780 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col8a1Q00780 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
Col8a1Q00780 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC14.64□□□□□ -0.07
Col8a1Q00780 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col8a1Q00780 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col8a1Q00780 Gm38345-201ENSMUST00000192635 1748 ntBASIC14.64□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 43.8 ms