Protein–RNA interactions for Protein: P97503

Nkx3-2, Homeobox protein Nkx-3.2, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-2P97503 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nkx3-2P97503 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nkx3-2P97503 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nkx3-2P97503 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nkx3-2P97503 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Nkx3-2P97503 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Nkx3-2P97503 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Nkx3-2P97503 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Nkx3-2P97503 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Nkx3-2P97503 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Nkx3-2P97503 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC16.29■□□□□ 0.2
Nkx3-2P97503 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Nkx3-2P97503 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Nkx3-2P97503 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC16.29■□□□□ 0.2
Nkx3-2P97503 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Nkx3-2P97503 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Nkx3-2P97503 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Nkx3-2P97503 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Nkx3-2P97503 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
Nkx3-2P97503 Gm29791-202ENSMUST00000207888 369 ntBASIC16.29■□□□□ 0.2
Nkx3-2P97503 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Nkx3-2P97503 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Nkx3-2P97503 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Nkx3-2P97503 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
Nkx3-2P97503 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
Nkx3-2P97503 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Nkx3-2P97503 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Nkx3-2P97503 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Nkx3-2P97503 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Nkx3-2P97503 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Nkx3-2P97503 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Nkx3-2P97503 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Nkx3-2P97503 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Nkx3-2P97503 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Nkx3-2P97503 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
Nkx3-2P97503 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Nkx3-2P97503 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Nkx3-2P97503 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Nkx3-2P97503 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Nkx3-2P97503 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Nkx3-2P97503 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC16.28■□□□□ 0.2
Nkx3-2P97503 Gm9694-201ENSMUST00000193347 1189 ntBASIC16.28■□□□□ 0.2
Nkx3-2P97503 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC16.28■□□□□ 0.2
Nkx3-2P97503 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Nkx3-2P97503 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC16.28■□□□□ 0.2
Nkx3-2P97503 AC154231.1-201ENSMUST00000220564 2175 ntBASIC16.28■□□□□ 0.2
Nkx3-2P97503 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC16.28■□□□□ 0.2
Nkx3-2P97503 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Nkx3-2P97503 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Nkx3-2P97503 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Nkx3-2P97503 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Nkx3-2P97503 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Nkx3-2P97503 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Nkx3-2P97503 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Nkx3-2P97503 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Nkx3-2P97503 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Nkx3-2P97503 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC16.27■□□□□ 0.2
Nkx3-2P97503 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC16.27■□□□□ 0.2
Nkx3-2P97503 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Nkx3-2P97503 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC16.27■□□□□ 0.2
Nkx3-2P97503 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Nkx3-2P97503 Gm7889-201ENSMUST00000185591 958 ntBASIC16.27■□□□□ 0.2
Nkx3-2P97503 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC16.27■□□□□ 0.2
Nkx3-2P97503 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Nkx3-2P97503 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Nkx3-2P97503 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Nkx3-2P97503 Gm7292-201ENSMUST00000194706 2527 ntBASIC16.27■□□□□ 0.2
Nkx3-2P97503 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC16.27■□□□□ 0.2
Nkx3-2P97503 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
Nkx3-2P97503 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Nkx3-2P97503 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Nkx3-2P97503 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Nkx3-2P97503 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
Nkx3-2P97503 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC16.27■□□□□ 0.19
Nkx3-2P97503 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nkx3-2P97503 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nkx3-2P97503 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Nkx3-2P97503 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nkx3-2P97503 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC16.26■□□□□ 0.19
Nkx3-2P97503 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Nkx3-2P97503 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC16.26■□□□□ 0.19
Nkx3-2P97503 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
Nkx3-2P97503 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nkx3-2P97503 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Nkx3-2P97503 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nkx3-2P97503 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nkx3-2P97503 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nkx3-2P97503 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Nkx3-2P97503 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nkx3-2P97503 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Nkx3-2P97503 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Nkx3-2P97503 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Nkx3-2P97503 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Nkx3-2P97503 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Nkx3-2P97503 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
Nkx3-2P97503 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Nkx3-2P97503 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Nkx3-2P97503 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Nkx3-2P97503 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Nkx3-2P97503 Gm13401-201ENSMUST00000117074 291 ntBASIC16.25■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms