Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ercc3P49135 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Ercc3P49135 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ercc3P49135 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Ercc3P49135 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Ercc3P49135 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ercc3P49135 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC20.44■□□□□ 0.86
Ercc3P49135 Gm11539-201ENSMUST00000119837 557 ntBASIC20.44■□□□□ 0.86
Ercc3P49135 Gm13436-201ENSMUST00000120418 567 ntBASIC20.44■□□□□ 0.86
Ercc3P49135 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Ercc3P49135 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
Ercc3P49135 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Ercc3P49135 AC153881.2-201ENSMUST00000214877 204 ntBASIC20.44■□□□□ 0.86
Ercc3P49135 Odf3b-204ENSMUST00000227834 930 ntBASIC20.44■□□□□ 0.86
Ercc3P49135 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Ercc3P49135 Gm19439-201ENSMUST00000198195 2273 ntBASIC20.44■□□□□ 0.86
Ercc3P49135 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ercc3P49135 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ercc3P49135 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ercc3P49135 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ercc3P49135 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ercc3P49135 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ercc3P49135 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ercc3P49135 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ercc3P49135 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ercc3P49135 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ercc3P49135 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
Ercc3P49135 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ercc3P49135 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ercc3P49135 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Ercc3P49135 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ercc3P49135 Gm43799-201ENSMUST00000201845 579 ntBASIC20.43■□□□□ 0.86
Ercc3P49135 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC20.43■□□□□ 0.86
Ercc3P49135 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ercc3P49135 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ercc3P49135 Gm19721-201ENSMUST00000195284 1764 ntBASIC20.43■□□□□ 0.86
Ercc3P49135 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ercc3P49135 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ercc3P49135 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Ercc3P49135 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Ercc3P49135 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
Ercc3P49135 Gm43808-201ENSMUST00000202534 2065 ntBASIC20.42■□□□□ 0.86
Ercc3P49135 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Ercc3P49135 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Ercc3P49135 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ercc3P49135 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ercc3P49135 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ercc3P49135 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC20.42■□□□□ 0.86
Ercc3P49135 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Ercc3P49135 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC20.42■□□□□ 0.86
Ercc3P49135 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Ercc3P49135 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ercc3P49135 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
Ercc3P49135 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC20.42■□□□□ 0.86
Ercc3P49135 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
Ercc3P49135 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ercc3P49135 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
Ercc3P49135 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ercc3P49135 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ercc3P49135 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Ercc3P49135 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ercc3P49135 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ercc3P49135 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ercc3P49135 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC20.41■□□□□ 0.86
Ercc3P49135 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Ercc3P49135 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ercc3P49135 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ercc3P49135 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ercc3P49135 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ercc3P49135 Gm7638-201ENSMUST00000121348 967 ntBASIC20.41■□□□□ 0.86
Ercc3P49135 Gm4217-201ENSMUST00000182243 1002 ntBASIC20.41■□□□□ 0.86
Ercc3P49135 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC20.41■□□□□ 0.86
Ercc3P49135 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ercc3P49135 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Ercc3P49135 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ercc3P49135 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ercc3P49135 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ercc3P49135 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ercc3P49135 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC20.41■□□□□ 0.86
Ercc3P49135 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC20.41■□□□□ 0.86
Ercc3P49135 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ercc3P49135 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC20.4■□□□□ 0.86
Ercc3P49135 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Ercc3P49135 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Ercc3P49135 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC20.4■□□□□ 0.86
Ercc3P49135 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
Ercc3P49135 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Ercc3P49135 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Ercc3P49135 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC20.4■□□□□ 0.86
Ercc3P49135 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Ercc3P49135 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Ercc3P49135 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Ercc3P49135 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Ercc3P49135 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Ercc3P49135 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Ercc3P49135 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Ercc3P49135 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC20.39■□□□□ 0.85
Ercc3P49135 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
Ercc3P49135 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
Ercc3P49135 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms