Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col2a1P28481 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC19.63■□□□□ 0.73
Col2a1P28481 AC125350.1-201ENSMUST00000225115 903 ntBASIC19.63■□□□□ 0.73
Col2a1P28481 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col2a1P28481 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC19.63■□□□□ 0.73
Col2a1P28481 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Col2a1P28481 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col2a1P28481 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Col2a1P28481 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Col2a1P28481 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col2a1P28481 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col2a1P28481 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col2a1P28481 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Col2a1P28481 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
Col2a1P28481 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col2a1P28481 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC19.62■□□□□ 0.73
Col2a1P28481 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC19.62■□□□□ 0.73
Col2a1P28481 Phf7-203ENSMUST00000226565 1971 ntBASIC19.62■□□□□ 0.73
Col2a1P28481 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC19.62■□□□□ 0.73
Col2a1P28481 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col2a1P28481 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col2a1P28481 Gm5953-201ENSMUST00000220644 2616 ntBASIC19.62■□□□□ 0.73
Col2a1P28481 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col2a1P28481 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Col2a1P28481 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Col2a1P28481 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC19.61■□□□□ 0.73
Col2a1P28481 Gm15794-201ENSMUST00000120182 631 ntBASIC19.61■□□□□ 0.73
Col2a1P28481 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC19.61■□□□□ 0.73
Col2a1P28481 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC19.61■□□□□ 0.73
Col2a1P28481 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col2a1P28481 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col2a1P28481 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col2a1P28481 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Col2a1P28481 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col2a1P28481 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Col2a1P28481 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Col2a1P28481 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col2a1P28481 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col2a1P28481 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col2a1P28481 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Col2a1P28481 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col2a1P28481 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col2a1P28481 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col2a1P28481 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Col2a1P28481 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC19.6■□□□□ 0.73
Col2a1P28481 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col2a1P28481 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col2a1P28481 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col2a1P28481 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC19.6■□□□□ 0.73
Col2a1P28481 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC19.6■□□□□ 0.73
Col2a1P28481 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Col2a1P28481 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC19.6■□□□□ 0.73
Col2a1P28481 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC19.6■□□□□ 0.73
Col2a1P28481 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Col2a1P28481 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col2a1P28481 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Col2a1P28481 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC19.59■□□□□ 0.73
Col2a1P28481 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col2a1P28481 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Col2a1P28481 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC19.59■□□□□ 0.73
Col2a1P28481 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col2a1P28481 Mir3081-201ENSMUST00000175305 84 ntBASIC19.59■□□□□ 0.73
Col2a1P28481 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC19.59■□□□□ 0.73
Col2a1P28481 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Col2a1P28481 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col2a1P28481 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col2a1P28481 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col2a1P28481 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Col2a1P28481 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Col2a1P28481 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Col2a1P28481 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Col2a1P28481 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Col2a1P28481 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Col2a1P28481 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Col2a1P28481 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC19.58■□□□□ 0.72
Col2a1P28481 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
Col2a1P28481 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC19.58■□□□□ 0.72
Col2a1P28481 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Col2a1P28481 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Col2a1P28481 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Col2a1P28481 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
Col2a1P28481 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC19.58■□□□□ 0.72
Col2a1P28481 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
Col2a1P28481 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Col2a1P28481 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Col2a1P28481 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Col2a1P28481 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col2a1P28481 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col2a1P28481 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
Col2a1P28481 Zkscan4-202ENSMUST00000225845 1506 ntBASIC19.57■□□□□ 0.72
Col2a1P28481 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC19.57■□□□□ 0.72
Col2a1P28481 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col2a1P28481 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col2a1P28481 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Col2a1P28481 Wnt10b-204ENSMUST00000226655 1807 ntBASIC19.57■□□□□ 0.72
Col2a1P28481 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
Col2a1P28481 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col2a1P28481 Gm29707-201ENSMUST00000196325 491 ntBASIC19.56■□□□□ 0.72
Col2a1P28481 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col2a1P28481 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms