Protein–RNA interactions for Protein: P23440

Pde6b, Rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta, mousemouse

Predictions only

Length 856 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pde6bP23440 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Pde6bP23440 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Pde6bP23440 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Pde6bP23440 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Pde6bP23440 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Pde6bP23440 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Pde6bP23440 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Pde6bP23440 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Pde6bP23440 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Pde6bP23440 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Pde6bP23440 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Pde6bP23440 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Pde6bP23440 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Pde6bP23440 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Pde6bP23440 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Pde6bP23440 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Pde6bP23440 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Pde6bP23440 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Pde6bP23440 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Pde6bP23440 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC18.79■□□□□ 0.6
Pde6bP23440 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Pde6bP23440 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Pde6bP23440 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Pde6bP23440 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Pde6bP23440 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Pde6bP23440 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC18.78■□□□□ 0.6
Pde6bP23440 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Pde6bP23440 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC18.78■□□□□ 0.6
Pde6bP23440 Gm14859-201ENSMUST00000117752 357 ntBASIC18.78■□□□□ 0.6
Pde6bP23440 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
Pde6bP23440 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Pde6bP23440 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Pde6bP23440 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Pde6bP23440 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Pde6bP23440 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Pde6bP23440 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Pde6bP23440 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Pde6bP23440 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Pde6bP23440 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Pde6bP23440 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Pde6bP23440 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Pde6bP23440 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Pde6bP23440 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Pde6bP23440 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
Pde6bP23440 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
Pde6bP23440 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Pde6bP23440 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Pde6bP23440 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Pde6bP23440 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Pde6bP23440 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Pde6bP23440 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Pde6bP23440 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Pde6bP23440 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Pde6bP23440 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Pde6bP23440 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Pde6bP23440 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Pde6bP23440 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Pde6bP23440 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Pde6bP23440 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC18.76■□□□□ 0.59
Pde6bP23440 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC18.76■□□□□ 0.59
Pde6bP23440 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC18.76■□□□□ 0.59
Pde6bP23440 Gm27389-201ENSMUST00000183622 195 ntBASIC18.76■□□□□ 0.59
Pde6bP23440 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC18.76■□□□□ 0.59
Pde6bP23440 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Pde6bP23440 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Pde6bP23440 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Pde6bP23440 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Pde6bP23440 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Pde6bP23440 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Pde6bP23440 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Pde6bP23440 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC18.75■□□□□ 0.59
Pde6bP23440 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Pde6bP23440 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Pde6bP23440 Gm37025-201ENSMUST00000195159 829 ntBASIC18.75■□□□□ 0.59
Pde6bP23440 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Pde6bP23440 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Pde6bP23440 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
Pde6bP23440 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Pde6bP23440 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Pde6bP23440 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Pde6bP23440 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC18.75■□□□□ 0.59
Pde6bP23440 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Pde6bP23440 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Pde6bP23440 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Pde6bP23440 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Pde6bP23440 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Pde6bP23440 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC18.74■□□□□ 0.59
Pde6bP23440 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Pde6bP23440 Gm9731-201ENSMUST00000209480 747 ntBASIC18.74■□□□□ 0.59
Pde6bP23440 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Pde6bP23440 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Pde6bP23440 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Pde6bP23440 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Pde6bP23440 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Pde6bP23440 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Pde6bP23440 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Pde6bP23440 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Pde6bP23440 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Pde6bP23440 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Pde6bP23440 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 18.4 ms