Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chmp6P0C0A3 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Chmp6P0C0A3 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Chmp6P0C0A3 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chmp6P0C0A3 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chmp6P0C0A3 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chmp6P0C0A3 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC18.79■□□□□ 0.6
Chmp6P0C0A3 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Chmp6P0C0A3 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Chmp6P0C0A3 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
Chmp6P0C0A3 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Chmp6P0C0A3 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC18.78■□□□□ 0.6
Chmp6P0C0A3 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Chmp6P0C0A3 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Chmp6P0C0A3 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Chmp6P0C0A3 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Chmp6P0C0A3 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Chmp6P0C0A3 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Chmp6P0C0A3 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Chmp6P0C0A3 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Chmp6P0C0A3 Idnk-204ENSMUST00000226010 1898 ntBASIC18.77■□□□□ 0.6
Chmp6P0C0A3 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Chmp6P0C0A3 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Chmp6P0C0A3 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Chmp6P0C0A3 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
Chmp6P0C0A3 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC18.77■□□□□ 0.6
Chmp6P0C0A3 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Chmp6P0C0A3 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Chmp6P0C0A3 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC18.77■□□□□ 0.6
Chmp6P0C0A3 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Chmp6P0C0A3 Gm11643-201ENSMUST00000119578 864 ntBASIC18.77■□□□□ 0.6
Chmp6P0C0A3 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC18.77■□□□□ 0.6
Chmp6P0C0A3 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Chmp6P0C0A3 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Chmp6P0C0A3 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Chmp6P0C0A3 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Chmp6P0C0A3 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Chmp6P0C0A3 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Chmp6P0C0A3 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Chmp6P0C0A3 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Chmp6P0C0A3 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Chmp6P0C0A3 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Chmp6P0C0A3 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Chmp6P0C0A3 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Chmp6P0C0A3 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Chmp6P0C0A3 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Chmp6P0C0A3 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Chmp6P0C0A3 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Chmp6P0C0A3 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Chmp6P0C0A3 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Chmp6P0C0A3 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Chmp6P0C0A3 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Chmp6P0C0A3 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Chmp6P0C0A3 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Chmp6P0C0A3 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Chmp6P0C0A3 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Chmp6P0C0A3 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Chmp6P0C0A3 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Chmp6P0C0A3 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Chmp6P0C0A3 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Chmp6P0C0A3 Gm13401-201ENSMUST00000117074 291 ntBASIC18.75■□□□□ 0.59
Chmp6P0C0A3 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC18.75■□□□□ 0.59
Chmp6P0C0A3 Gm10252-201ENSMUST00000209541 832 ntBASIC18.75■□□□□ 0.59
Chmp6P0C0A3 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Chmp6P0C0A3 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Chmp6P0C0A3 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Chmp6P0C0A3 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Chmp6P0C0A3 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC18.75■□□□□ 0.59
Chmp6P0C0A3 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Chmp6P0C0A3 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Chmp6P0C0A3 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Chmp6P0C0A3 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Chmp6P0C0A3 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
Chmp6P0C0A3 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Chmp6P0C0A3 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chmp6P0C0A3 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chmp6P0C0A3 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chmp6P0C0A3 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chmp6P0C0A3 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chmp6P0C0A3 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chmp6P0C0A3 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chmp6P0C0A3 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chmp6P0C0A3 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Chmp6P0C0A3 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Chmp6P0C0A3 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chmp6P0C0A3 Gm715-201ENSMUST00000117865 831 ntBASIC18.74■□□□□ 0.59
Chmp6P0C0A3 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC18.74■□□□□ 0.59
Chmp6P0C0A3 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chmp6P0C0A3 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC18.74■□□□□ 0.59
Chmp6P0C0A3 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chmp6P0C0A3 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chmp6P0C0A3 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chmp6P0C0A3 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chmp6P0C0A3 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chmp6P0C0A3 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chmp6P0C0A3 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chmp6P0C0A3 Gm37194-201ENSMUST00000193092 3031 ntBASIC18.74■□□□□ 0.59
Chmp6P0C0A3 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Chmp6P0C0A3 Gm45244-201ENSMUST00000211328 2200 ntBASIC18.73■□□□□ 0.59
Chmp6P0C0A3 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms